Detail information of GWHGAAZE023409


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02534.10unnamed protein product [Coffea canephora]
Swissprottr|A3KPE8|SDN1_ARATH7E-145Small RNA degrading nuclease 1
trEMBLtr|A0A068U2Z7|A0A068U2Z7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02534.1}
TAIR10AT3G50100.13E-119small RNA degrading nuclease 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene76188107624374-
GWHAAZE00000007mRNA76188107624374-
GWHAAZE00000007exon76243427624374-
GWHAAZE00000007exon76235577623736-
GWHAAZE00000007exon76233547623443-
GWHAAZE00000007exon76230617623129-
GWHAAZE00000007exon76218097621949-
GWHAAZE00000007exon76215977621713-
GWHAAZE00000007exon76214527621521-
GWHAAZE00000007exon76211597621265-
GWHAAZE00000007exon76205437620677-
GWHAAZE00000007exon76203527620459-
GWHAAZE00000007exon76198867619990-
GWHAAZE00000007exon76188107619345-
GWHAAZE00000007CDS76243427624374-
GWHAAZE00000007CDS76235577623736-
GWHAAZE00000007CDS76233547623443-
GWHAAZE00000007CDS76230617623129-
GWHAAZE00000007CDS76218097621949-
GWHAAZE00000007CDS76215977621713-
GWHAAZE00000007CDS76214527621521-
GWHAAZE00000007CDS76211597621265-
GWHAAZE00000007CDS76205437620677-
GWHAAZE00000007CDS76203527620459-
GWHAAZE00000007CDS76198867619990-
GWHAAZE00000007CDS76190257619345-
GWHAAZE00000007three_prime_UTR76188107619024-
Transcript Sequence

Network for GWHGAAZE023409

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.25RNase_T1452958.10E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14570REX1, REXO1, RNH70 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.906
SRR3591706second leaf0.922
SRR3591707mature leaf0.493
SRR3591708Shoot apex3.283
SRR3591709Stem0.291
SRR3591710White floral bud1.837
SRR3591711White flower0.888
SRR3591712Green floral bud6.585
SRR3591713Yellow flower0.724
SRP173429 SRR8316895Juvenile bud stage 3.118
SRR8316896Juvenile bud stage 4.143
SRR8316897Juvenile bud stage 0.260
SRR8316894Third green stage 1.784
SRR8316900Third green stage 4.769
SRR8316901Third green stage 2.156
SRR8316898Complete white stage 0.087
SRR8316899Complete white stage 2.711
SRR8316903Complete white stage 0.056
SRR8316902Silver flowering stage0.179
SRR8316904Silver flowering stage0.082
SRR8316905Silver flowering stage0.093
SRR8316906Gold flowering stage 0.631
SRR8316907Gold flowering stage 0.392
SRR8316908Gold flowering stage 0.111
SRP132670SRR6706286Control1.888
SRR6706287Light intensity 50%2.207
SRR6706288Light intensity 20%1.710
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.206
CNS0095593Slightly white alabastrum(diploid) 23.178
CNS0095594Slightly white alabastrum(diploid) 33.265
CNS0095595Whole white alabastrum(diploid) 20.728
CNS0095596Whole white alabastrum(diploid) 32.908
CNS0095597Whole white alabastrum(diploid) 41.309
CNS0095598Silvery flower (diploied) 10.583
CNS0095599Silvery flower (diploied) 20.577
CNS0095600Silvery flower (diploied) 30.272
CNS0095601Golden flower (diploid) 11.133
CNS0095602Golden flower (diploid) 20.445
CNS0095603Golden flower (diploid) 30.338
CNS0095604Slightly white alabastrum(tetraploid) 14.368
CNS0095605Slightly white alabastrum(tetraploid) 24.686
CNS0095606Slightly white alabastrum(tetraploid) 33.555
CNS0095607Whole white alabastrum(tetraploid) 15.326
CNS0095608Whole white alabastrum(tetraploid) 25.367
CNS0095609Whole white alabastrum(tetraploid) 35.104
CNS0095610Silvery flower (tetraploid) 10.395
CNS0095611Silvery flower (tetraploid) 20.586
CNS0095612Silvery flower (tetraploid) 30.808
CNS0095613Golden flower (tetraploid) 10.391
CNS0095614Golden flower (tetraploid) 20.315
CNS0095615Golden flower (tetraploid) 30.454
CRA001975CRR073297Stem 15.919
CRR073298Stem 24.054
CRR073299Stem 33.197
CRR073300Leaf 13.247
CRR073301Leaf 23.452
CRR073302Leaf 32.984
CRR073303Juvenile bud 11.214
CRR073304Juvenile bud 21.057
CRR073305Juvenile bud 31.987
CRR073306Third green 10.196
CRR073307Third green 20.043
CRR073308Third green 30.091
CRR073309Second white 10.173
CRR073310Second white 20.000
CRR073311Second white 30.097
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.148
CRR073316Gold flowering 21.623
CRR073317Gold flowering 30.622
CRR073318Tawny withering 13.219
CRR073319Tawny withering 21.302
CRR073320Tawny withering 33.661