Detail information of GWHGAAZE023395


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652795.10PREDICTED: histone-lysine N-methyltransferase CLF isoform X1 [Vitis vinifera]
Swissprottr|P93831|CLF_ARATH0Histone-lysine N-methyltransferase CLF
trEMBLtr|A0A061DI14|A0A061DI14_THECC0SET domain-containing protein isoform 1 {ECO:0000313|EMBL:EOX91476.1}
TAIR10AT2G23380.10SET domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene72313737241966-
GWHAAZE00000007mRNA72313737241966-
GWHAAZE00000007exon72313737231564-
GWHAAZE00000007exon72324137232505-
GWHAAZE00000007exon72327897232836-
GWHAAZE00000007exon72329817233018-
GWHAAZE00000007exon72338247233955-
GWHAAZE00000007exon72340697234285-
GWHAAZE00000007exon72343867234522-
GWHAAZE00000007exon72358867236636-
GWHAAZE00000007exon72367807236851-
GWHAAZE00000007exon72369307236977-
GWHAAZE00000007exon72370797237222-
GWHAAZE00000007exon72376777237761-
GWHAAZE00000007exon72386337238794-
GWHAAZE00000007exon72389207239245-
GWHAAZE00000007exon72393657239466-
GWHAAZE00000007exon72418957241966-
GWHAAZE00000007CDS72418957241966-
GWHAAZE00000007CDS72393657239466-
GWHAAZE00000007CDS72389207239245-
GWHAAZE00000007CDS72386337238794-
GWHAAZE00000007CDS72376777237761-
GWHAAZE00000007CDS72370797237222-
GWHAAZE00000007CDS72369307236977-
GWHAAZE00000007CDS72367807236851-
GWHAAZE00000007CDS72358867236636-
GWHAAZE00000007CDS72343867234522-
GWHAAZE00000007CDS72340697234285-
GWHAAZE00000007CDS72338247233955-
GWHAAZE00000007CDS72329817233018-
GWHAAZE00000007CDS72327897232836-
GWHAAZE00000007CDS72324137232505-
GWHAAZE00000007CDS72313737231564-
Transcript Sequence

Network for GWHGAAZE023395

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00856.29SET7798372.90E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySET

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.891
SRR3591706second leaf3.400
SRR3591707mature leaf2.188
SRR3591708Shoot apex14.988
SRR3591709Stem9.704
SRR3591710White floral bud4.484
SRR3591711White flower3.666
SRR3591712Green floral bud4.551
SRR3591713Yellow flower4.114
SRP173429 SRR8316895Juvenile bud stage 3.568
SRR8316896Juvenile bud stage 3.431
SRR8316897Juvenile bud stage 2.117
SRR8316894Third green stage 1.865
SRR8316900Third green stage 3.813
SRR8316901Third green stage 2.931
SRR8316898Complete white stage 3.343
SRR8316899Complete white stage 6.598
SRR8316903Complete white stage 3.520
SRR8316902Silver flowering stage1.990
SRR8316904Silver flowering stage2.893
SRR8316905Silver flowering stage1.847
SRR8316906Gold flowering stage 5.708
SRR8316907Gold flowering stage 4.869
SRR8316908Gold flowering stage 4.376
SRP132670SRR6706286Control3.204
SRR6706287Light intensity 50%3.098
SRR6706288Light intensity 20%2.876
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.317
CNS0095593Slightly white alabastrum(diploid) 22.912
CNS0095594Slightly white alabastrum(diploid) 33.618
CNS0095595Whole white alabastrum(diploid) 23.080
CNS0095596Whole white alabastrum(diploid) 32.695
CNS0095597Whole white alabastrum(diploid) 41.817
CNS0095598Silvery flower (diploied) 14.916
CNS0095599Silvery flower (diploied) 24.247
CNS0095600Silvery flower (diploied) 34.161
CNS0095601Golden flower (diploid) 14.401
CNS0095602Golden flower (diploid) 23.874
CNS0095603Golden flower (diploid) 33.587
CNS0095604Slightly white alabastrum(tetraploid) 13.005
CNS0095605Slightly white alabastrum(tetraploid) 22.429
CNS0095606Slightly white alabastrum(tetraploid) 35.030
CNS0095607Whole white alabastrum(tetraploid) 11.372
CNS0095608Whole white alabastrum(tetraploid) 21.181
CNS0095609Whole white alabastrum(tetraploid) 33.569
CNS0095610Silvery flower (tetraploid) 12.407
CNS0095611Silvery flower (tetraploid) 21.718
CNS0095612Silvery flower (tetraploid) 32.346
CNS0095613Golden flower (tetraploid) 11.406
CNS0095614Golden flower (tetraploid) 21.898
CNS0095615Golden flower (tetraploid) 31.924
CRA001975CRR073297Stem 15.521
CRR073298Stem 24.749
CRR073299Stem 34.156
CRR073300Leaf 13.487
CRR073301Leaf 24.484
CRR073302Leaf 32.335
CRR073303Juvenile bud 12.039
CRR073304Juvenile bud 21.547
CRR073305Juvenile bud 32.520
CRR073306Third green 11.868
CRR073307Third green 22.210
CRR073308Third green 31.849
CRR073309Second white 11.610
CRR073310Second white 21.339
CRR073311Second white 30.708
CRR073312Silver flowering 10.849
CRR073313Silver flowering 21.205
CRR073314Silver flowering 31.490
CRR073315Gold flowering 11.468
CRR073316Gold flowering 22.079
CRR073317Gold flowering 31.413
CRR073318Tawny withering 115.296
CRR073319Tawny withering 28.458
CRR073320Tawny withering 310.520