Gene detail

Detail information of GWHGAAZE023392

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011008522.1	6.3914E-173	PREDICTED: nicotinate phosphoribosyltransferase-like [Populus euphratica]
COG	YP_005517482.1	1E-38	nicotinate phosphoribosyltransferase
trEMBL	tr\|B9H6H6\|B9H6H6_POPTR	2E-172	Nicotinate phosphoribosyltransferase family protein {ECO:0000313\|EMBL:EEE93473.1}
TAIR10	AT2G23420.1	1E-133	nicotinate phosphoribosyltransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	7054691	7058053	-
GWHAAZE00000007	mRNA	7054691	7058053	-
GWHAAZE00000007	exon	7054691	7054768	-
GWHAAZE00000007	exon	7054874	7054986	-
GWHAAZE00000007	exon	7055668	7055776	-
GWHAAZE00000007	exon	7056186	7056284	-
GWHAAZE00000007	exon	7056366	7056500	-
GWHAAZE00000007	exon	7057454	7057628	-
GWHAAZE00000007	exon	7057941	7058053	-
GWHAAZE00000007	CDS	7057941	7058053	-
GWHAAZE00000007	CDS	7057454	7057628	-
GWHAAZE00000007	CDS	7056366	7056500	-
GWHAAZE00000007	CDS	7056186	7056284	-
GWHAAZE00000007	CDS	7055668	7055776	-
GWHAAZE00000007	CDS	7054874	7054986	-
GWHAAZE00000007	CDS	7054691	7054768	-

Transcript Sequence
>GWHTAAZE023422 ATGCAGTTGATTTGTGCTTACTTTGATACAGTAGTGTTGCGTTCGCTTTATCAGGTAATGAGAAGTGGTGTTCCTAATTTTTGTGCAGTTGCTCTAGCACTAAATGATTTGGGGTACAAAGCAGCAGGCATTAGATTAGACTCGGGTGACCTTGCCTATCTGTCTTGTGAAAGCAGGAAGTTTTTTCGCGTTATTGAGAAGGAATTTAAAGCACCAGGTTTCGGAGAGATGAATATCACTGCTAGTAATGACCTCAATGAAGAAACATTAGATGCTCTCAACAAGCAGGGTCATGAGGTTGATGCCTTTGGAATTGGAACCTATTTGGTTACATGCTATGCTCAAGCTGCTCTAGGTTGTGTTTTCAAGCTTGTTGAAATAAATAATCAGCCACGGATTAAGCTTTCTGAAGACGTTTCAAAGGTTTCTATTCCATGTAAAAAACGGTGTTTCAGATTGTATGGAAAGGAAGGTTACGCTCTTGTAGACATAATGACAGGTGAAAATGAACCGCCTCCAAAGGTAGGCGAACGGATTCTATGTCGTCACCCATTTAATGAATCTAAGAGAGCATATGTGGTGCCACAGCAAGTTGAGGAGCTTATGAAGTGTGTGTGGCCTGGGAGCCCAGATAAACCAAGAGAAGAGTTGTTGCCGCTTAAGGAGATCAGGGACCGGTGCATTAAGCAACTGGATAAAATGCGCCCGGATCACATGAGGAGATTGAACCCAACACCATACAAGGTTAGCGTAAGTGCCAAGTTGTATGATTTCATTCATTTCCTATGGCTCAATGAGGCACCTGTTGGGGAGTTGCAGTGA

Network for GWHGAAZE023392

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17956.2	NAPRTase_C	147	258	2.40E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00763	pncB, NAPRT1	Metabolic pathways	map01100
K00763	pncB, NAPRT1	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0009435	biological_process	NAD biosynthetic process
GO:0004514	molecular_function	nicotinate-nucleotide diphosphorylase (carboxylating) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.122
	SRR3591706	second leaf	36.087
	SRR3591707	mature leaf	32.039
	SRR3591708	Shoot apex	29.106
	SRR3591709	Stem	34.752
	SRR3591710	White floral bud	31.459
	SRR3591711	White flower	24.211
	SRR3591712	Green floral bud	32.884
	SRR3591713	Yellow flower	23.023
SRP173429	SRR8316895	Juvenile bud stage	20.270
	SRR8316896	Juvenile bud stage	27.907
	SRR8316897	Juvenile bud stage	13.542
	SRR8316894	Third green stage	13.605
	SRR8316900	Third green stage	42.529
	SRR8316901	Third green stage	43.110
	SRR8316898	Complete white stage	19.497
	SRR8316899	Complete white stage	53.872
	SRR8316903	Complete white stage	31.190
	SRR8316902	Silver flowering stage	10.838
	SRR8316904	Silver flowering stage	20.259
	SRR8316905	Silver flowering stage	8.157
	SRR8316906	Gold flowering stage	33.925
	SRR8316907	Gold flowering stage	29.434
	SRR8316908	Gold flowering stage	25.750
SRP132670	SRR6706286	Control	26.087
	SRR6706287	Light intensity 50%	27.360
	SRR6706288	Light intensity 20%	28.922
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.651
	CNS0095593	Slightly white alabastrum(diploid) 2	35.746
	CNS0095594	Slightly white alabastrum(diploid) 3	31.280
	CNS0095595	Whole white alabastrum(diploid) 2	30.105
	CNS0095596	Whole white alabastrum(diploid) 3	34.554
	CNS0095597	Whole white alabastrum(diploid) 4	30.015
	CNS0095598	Silvery flower (diploied) 1	18.117
	CNS0095599	Silvery flower (diploied) 2	10.556
	CNS0095600	Silvery flower (diploied) 3	18.846
	CNS0095601	Golden flower (diploid) 1	13.670
	CNS0095602	Golden flower (diploid) 2	13.778
	CNS0095603	Golden flower (diploid) 3	13.379
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.958
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.129
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.269
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.285
	CNS0095608	Whole white alabastrum(tetraploid) 2	30.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.736
	CNS0095610	Silvery flower (tetraploid) 1	23.021
	CNS0095611	Silvery flower (tetraploid) 2	18.869
	CNS0095612	Silvery flower (tetraploid) 3	29.583
	CNS0095613	Golden flower (tetraploid) 1	23.746
	CNS0095614	Golden flower (tetraploid) 2	21.348
	CNS0095615	Golden flower (tetraploid) 3	19.846
CRA001975	CRR073297	Stem 1	23.434
	CRR073298	Stem 2	25.455
	CRR073299	Stem 3	18.149
	CRR073300	Leaf 1	43.016
	CRR073301	Leaf 2	29.629
	CRR073302	Leaf 3	21.058
	CRR073303	Juvenile bud 1	35.682
	CRR073304	Juvenile bud 2	32.776
	CRR073305	Juvenile bud 3	34.760
	CRR073306	Third green 1	17.991
	CRR073307	Third green 2	13.872
	CRR073308	Third green 3	20.681
	CRR073309	Second white 1	10.946
	CRR073310	Second white 2	18.228
	CRR073311	Second white 3	17.008
	CRR073312	Silver flowering 1	10.518
	CRR073313	Silver flowering 2	13.276
	CRR073314	Silver flowering 3	8.308
	CRR073315	Gold flowering 1	8.384
	CRR073316	Gold flowering 2	15.930
	CRR073317	Gold flowering 3	5.159
	CRR073318	Tawny withering 1	12.989
	CRR073319	Tawny withering 2	13.599
	CRR073320	Tawny withering 3	11.946