Gene detail

Detail information of GWHGAAZE023291

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011039231.1	4.29296E-92	PREDICTED: dof zinc finger protein DOF1.1-like isoform X2 [Populus euphratica]
Swissprot	tr\|Q84TE9\|DOF53_ARATH	4E-33	Dof zinc finger protein DOF5.3
trEMBL	tr\|A9P9B5\|A9P9B5_POPTR	1E-89	Uncharacterized protein {ECO:0000313\|EMBL:EEE91203.1}
TAIR10	AT5G60200.1	3E-27	TARGET OF MONOPTEROS 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	4503869	4504816	+
GWHAAZE00000007	mRNA	4503869	4504816	+
GWHAAZE00000007	exon	4503869	4504816	+
GWHAAZE00000007	CDS	4503869	4504816	+

Transcript Sequence
>GWHTAAZE023321 ATGATTCAAGAACTATTAGGAGGTGGAGGTGGAGGATCCAATCCATTAGGATCCTATGGAGGTGGAGAGAGAAAAATCTCAATTTCCAACATCCTAGAAAACCCTTCACCTTCTTCCTCAACAACCACCACCACTCCAACTACCTCGTCCACCCCCGAAAACCCTAACCTAAGATGCCCTCGCTGCGATTCCGCCAACACCAAATTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACCTGCCGCCGTTACTGGACCAAAGGAGGGGCCCTCCGCAATGTCCCCATCGGCGGTGGCTGCCGCAAGAACAAGGGCGGCACCGCTGCTTGCTCCGGCATAATGCAACCATCCTCCGGAGGAAAAGCAGCAGTCTCCTCTGGCAAGTTGATGAAGACAGTACTGTCTTCCTGCGAGAATGGAACACAAGACCTCTCATCAACGAATCCCATTCTGTGGGGCCCACCTCAAACCTCTCACCTCCTTGCGTTACTTAGATCCACCCAAAACCCAAACCCTAACCCTAATCATATTTCAAACTCTTGCTTGGTCAAAGAAGAAGGTTTTATGATGGGCTCCACCTCCCATTTGGGCTCAGATCAGGTCGCTGCAGGTCGGACTCTAGGGTTGGATCCTTCCTTTTGGAGAAACAATCAATTTCAAGGTCTCCAACAGCAACAGCAAAATGGGTTCATTCTAGGTGAAGTTCAAAATAACGGAATTCCGGATTTGTATCAACGGCTCAGATCGTCCTCGGCTAGTTACTATCCTGATAATACACCACTCATTTTAGGCAATGTGGCTAATTCGGCTTCGGCTGCTTCTTCGGCCATTTTGGATTCTGCTCCAGTAGCGGCTGGAGCTGAACTGGGGTACTGGAACCCCTCGCTCGCGTGGTCCGATCTACAAACTGCCAACGGTGCATATCACTAA

Network for GWHGAAZE023291

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	56	110	5.40E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.789
	SRR3591706	second leaf	11.339
	SRR3591707	mature leaf	11.138
	SRR3591708	Shoot apex	46.003
	SRR3591709	Stem	63.133
	SRR3591710	White floral bud	4.989
	SRR3591711	White flower	7.574
	SRR3591712	Green floral bud	9.760
	SRR3591713	Yellow flower	0.851
SRP173429	SRR8316895	Juvenile bud stage	5.265
	SRR8316896	Juvenile bud stage	4.888
	SRR8316897	Juvenile bud stage	2.355
	SRR8316894	Third green stage	2.200
	SRR8316900	Third green stage	3.052
	SRR8316901	Third green stage	2.247
	SRR8316898	Complete white stage	0.867
	SRR8316899	Complete white stage	5.993
	SRR8316903	Complete white stage	0.521
	SRR8316902	Silver flowering stage	0.414
	SRR8316904	Silver flowering stage	0.595
	SRR8316905	Silver flowering stage	0.403
	SRR8316906	Gold flowering stage	1.038
	SRR8316907	Gold flowering stage	1.138
	SRR8316908	Gold flowering stage	0.945
SRP132670	SRR6706286	Control	3.136
	SRR6706287	Light intensity 50%	2.596
	SRR6706288	Light intensity 20%	2.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.490
	CNS0095593	Slightly white alabastrum(diploid) 2	5.507
	CNS0095594	Slightly white alabastrum(diploid) 3	3.510
	CNS0095595	Whole white alabastrum(diploid) 2	3.386
	CNS0095596	Whole white alabastrum(diploid) 3	2.820
	CNS0095597	Whole white alabastrum(diploid) 4	2.475
	CNS0095598	Silvery flower (diploied) 1	3.687
	CNS0095599	Silvery flower (diploied) 2	3.057
	CNS0095600	Silvery flower (diploied) 3	3.380
	CNS0095601	Golden flower (diploid) 1	3.849
	CNS0095602	Golden flower (diploid) 2	3.446
	CNS0095603	Golden flower (diploid) 3	2.967
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.598
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.002
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.902
	CNS0095610	Silvery flower (tetraploid) 1	0.904
	CNS0095611	Silvery flower (tetraploid) 2	2.789
	CNS0095612	Silvery flower (tetraploid) 3	1.759
	CNS0095613	Golden flower (tetraploid) 1	0.189
	CNS0095614	Golden flower (tetraploid) 2	0.955
	CNS0095615	Golden flower (tetraploid) 3	0.080
CRA001975	CRR073297	Stem 1	9.864
	CRR073298	Stem 2	10.125
	CRR073299	Stem 3	21.568
	CRR073300	Leaf 1	4.805
	CRR073301	Leaf 2	4.579
	CRR073302	Leaf 3	5.120
	CRR073303	Juvenile bud 1	4.762
	CRR073304	Juvenile bud 2	1.186
	CRR073305	Juvenile bud 3	5.125
	CRR073306	Third green 1	1.427
	CRR073307	Third green 2	2.108
	CRR073308	Third green 3	1.222
	CRR073309	Second white 1	0.782
	CRR073310	Second white 2	0.673
	CRR073311	Second white 3	0.430
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	0.534
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	6.557
	CRR073316	Gold flowering 2	7.702
	CRR073317	Gold flowering 3	15.052
	CRR073318	Tawny withering 1	63.036
	CRR073319	Tawny withering 2	38.505
	CRR073320	Tawny withering 3	75.321