Detail information of GWHGAAZE023180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004299567.12.74216E-07PREDICTED: serine/threonine-protein kinase RIO1-like [Fragaria vesca subsp. vesca]
trEMBLtr|M5WWA9|M5WWA9_PRUPE0.0000009Serine/threonine-protein kinase RIO1 {ECO:0000256|PIRNR:PIRNR038147}
TAIR10AT2G24990.10.0004Serine/threonine-protein kinase Rio1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene12692021270112+
GWHAAZE00000007mRNA12692021270112+
GWHAAZE00000007exon12692021269334+
GWHAAZE00000007exon12700061270112+
GWHAAZE00000007CDS12692021269334+
GWHAAZE00000007CDS12700061270112+
Transcript Sequence

Network for GWHGAAZE023180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07178RIOK1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.008
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.004
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.148
SRR8316896Juvenile bud stage 0.117
SRR8316897Juvenile bud stage 0.013
SRR8316894Third green stage 0.002
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.267
SRR8316898Complete white stage 0.014
SRR8316899Complete white stage 0.509
SRR8316903Complete white stage 0.255
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.197
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.529
SRR6706287Light intensity 50%0.482
SRR6706288Light intensity 20%0.504
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.194
CNS0095594Slightly white alabastrum(diploid) 30.245
CNS0095595Whole white alabastrum(diploid) 20.633
CNS0095596Whole white alabastrum(diploid) 30.003
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.100
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.009
CNS0095603Golden flower (diploid) 30.446
CNS0095604Slightly white alabastrum(tetraploid) 10.647
CNS0095605Slightly white alabastrum(tetraploid) 20.376
CNS0095606Slightly white alabastrum(tetraploid) 30.242
CNS0095607Whole white alabastrum(tetraploid) 10.010
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.003
CNS0095610Silvery flower (tetraploid) 10.021
CNS0095611Silvery flower (tetraploid) 20.133
CNS0095612Silvery flower (tetraploid) 31.502
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.859
CRR073298Stem 20.311
CRR073299Stem 30.030
CRR073300Leaf 10.094
CRR073301Leaf 20.256
CRR073302Leaf 30.041
CRR073303Juvenile bud 10.311
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.002
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.005
CRR073311Second white 30.537
CRR073312Silver flowering 10.008
CRR073313Silver flowering 20.075
CRR073314Silver flowering 30.083
CRR073315Gold flowering 10.035
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.027
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000