Gene detail

Detail information of GWHGAAZE023178

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004299567.1	0	PREDICTED: serine/threonine-protein kinase RIO1-like [Fragaria vesca subsp. vesca]
COG	YP_255620.1	5E-32	hypothetical protein Saci_0965
Swissprot	tr\|Q9SJG2\|Y2296_ARATH	0.000000003	Probable receptor-like protein kinase At2g42960
trEMBL	tr\|V4TNU8\|V4TNU8_9ROSI	9E-179	Uncharacterized protein {ECO:0000313\|EMBL:ESR53355.1}
TAIR10	AT5G37350.1	8E-127	Serine/threonine-protein kinase Rio1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	1173877	1179167	+
GWHAAZE00000007	mRNA	1173877	1179167	+
GWHAAZE00000007	exon	1173877	1174125	+
GWHAAZE00000007	exon	1174370	1174498	+
GWHAAZE00000007	exon	1174864	1174943	+
GWHAAZE00000007	exon	1175547	1175753	+
GWHAAZE00000007	exon	1176999	1177109	+
GWHAAZE00000007	exon	1177240	1177313	+
GWHAAZE00000007	exon	1177524	1177600	+
GWHAAZE00000007	exon	1177789	1177872	+
GWHAAZE00000007	exon	1177951	1178043	+
GWHAAZE00000007	exon	1178147	1178254	+
GWHAAZE00000007	exon	1178330	1178401	+
GWHAAZE00000007	exon	1178511	1178988	+
GWHAAZE00000007	exon	1179066	1179167	+
GWHAAZE00000007	CDS	1173877	1174125	+
GWHAAZE00000007	CDS	1174370	1174498	+
GWHAAZE00000007	CDS	1174864	1174943	+
GWHAAZE00000007	CDS	1175547	1175753	+
GWHAAZE00000007	CDS	1176999	1177109	+
GWHAAZE00000007	CDS	1177240	1177313	+
GWHAAZE00000007	CDS	1177524	1177600	+
GWHAAZE00000007	CDS	1177789	1177872	+
GWHAAZE00000007	CDS	1177951	1178043	+
GWHAAZE00000007	CDS	1178147	1178254	+
GWHAAZE00000007	CDS	1178330	1178401	+
GWHAAZE00000007	CDS	1178511	1178882	+
GWHAAZE00000007	three_prime_UTR	1178883	1178988	+
GWHAAZE00000007	three_prime_UTR	1179066	1179167	+

Transcript Sequence
>GWHTAAZE023208 ATGGAAAGTGAAATTGAGGAAGAATCAATGATGATGGAGGAGGAGCTTGAAGGCTCCATTATGTCCAACAAGTACTTGGAGTATTTGGATTACGATGACGAAGAAGTAGCAGAGGGTTATTTCCCAATCAATAGTAGGCGTCCCAATGCTCATGGAGGCCTTCATCATTGTCCTAATAACTCCACCCTTCAACCTCTCTCCAATCGCTACCAGAATTTCTCCTCCCGAATCCGAGTTGGGCCTTTAGAGGAGTGGGAAGGCAGGTCAAATATTGGCATGTCCAACAGCGTGACAACCTCCATTCGAGAATTTGTTCGAGACATGGCCATTGGTAGAACCAAAGCTACCGATAGAGCAGATCGTGCCACTGTTGAGAAGGCAAATGTTTATCATGCAATCAATTCTGATGGTCACGAACTGGCAATCAAAGTGTTCAAAACATCCGTTCTAGATTTTAATCGGATTGGTAAGGGTCATCGGATTGCGTACCCAAAGCGGGGCGGCGGGTCGGGTGATCAGGTAGTGGCGGTGCCGGAGGTTTCACATTTGGGGTGGGGACATTGGTACACTTTGAGAGAGCTTGAATTTGCAACTGAGGGGTTTAGCGATGAGAATAGTATGGGATTGTTTACTGTGGGGTTCTGGAGGATAATACTCGAGTTGCTGAACAGGGATAGATATATACAAGGGGACTTCGATTCAGGCGGATACTGCAAGAACAATCCAAGGAAAATGATGGAGATATGGGCTGAGAAAGAAATGAGGAATCTGAATAGGATGAAAGATGCAGGAATTAGATGCCCTACTGTACATCATGTTAAACTTCATGTGCTGGTCATGGATTTCATAGGTAAGGCAGGTTGGGCAGCACCTATTCTGAATGATGCTGCACTGTCAATAGACAAGCTACGAGAAGGTTATAGGGAGATAATAGTTGCCATGCGAATGTTATATCAGAAGGCCAAGCTGGTGCATACAGACCTTAGTGAATTCAACATACTTTACTTTGAGGGACACATGCACATTATTGATGTTTCTCAAGCAGTTGAACCGTCCCAGCCTAATGCAATTGAATTCCTACGTCAAGATTGTGTCCATGTTTCTGATTTTTTCAAGAAACGTGGTGTAGCAGTTATGACAACTCGGGAGCTCTTTGATTTTATAGTTGATCCGAGTATTGGCGAGGAAGCAGTGGACAGTTATCTGGATGAGATACAACAAAAAATTGTGGCCAGAGGAGATATATCTGGGGAGGATGAAATTGCTGAATCCGTATTTGTGCAGTCATACATTCCGAGCACACTAAACCAGGTAATGAATGTTGAAGCAGATGTAGTACGGTTAACTAGTGGCGAGGACACTGAAGACATTTACTATAAAACTATCACAGGACTAAGTATGGCGCTTTCTAGTGTCCCACCGTCTCCACCTGAGACCGAATTTGACTCATCCGGCAGTGATGAAGAAAACTCGATTGCTTCAGATTCCTCATCCACAATCGAGGAGGCACAGGAGGAACCTATTGATAAAAAGGTTGCTAGAAAAGAAAACAAGAAGAAAGTCAAAGAAGAGAAGAGGGAAGCTCGGAAGCACAAATTGCGAAAGGCTGTAAAGAAAAAAAGGAAAAAGTTGTCGAAAGGCGGGAAGAGACGGTAGTTTGTTGGGATGGACCGATGGAGATGCAAGATCAGTTAGGTATTATTATTATTAACTCATCTTCTTAACTAATGTACACTGTTATTTGATGAGACTTTAGATTAAGTTAGATTAAGTTATTATACATTGTATTTGATGAGACTTCAATTATGTTGCTCAGATCCCCCCACATTTATGTGAAGATCCTATATAAATGTTCCAATTGAAT

Network for GWHGAAZE023178

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01163.23	RIO1	222	383	1.70E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07178	RIOK1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.229
	SRR3591706	second leaf	3.179
	SRR3591707	mature leaf	1.869
	SRR3591708	Shoot apex	9.267
	SRR3591709	Stem	2.918
	SRR3591710	White floral bud	3.161
	SRR3591711	White flower	2.875
	SRR3591712	Green floral bud	5.200
	SRR3591713	Yellow flower	1.605
SRP173429	SRR8316895	Juvenile bud stage	3.126
	SRR8316896	Juvenile bud stage	4.427
	SRR8316897	Juvenile bud stage	2.520
	SRR8316894	Third green stage	1.871
	SRR8316900	Third green stage	4.447
	SRR8316901	Third green stage	4.632
	SRR8316898	Complete white stage	0.416
	SRR8316899	Complete white stage	5.208
	SRR8316903	Complete white stage	1.016
	SRR8316902	Silver flowering stage	0.242
	SRR8316904	Silver flowering stage	0.497
	SRR8316905	Silver flowering stage	0.217
	SRR8316906	Gold flowering stage	0.606
	SRR8316907	Gold flowering stage	0.982
	SRR8316908	Gold flowering stage	1.007
SRP132670	SRR6706286	Control	3.698
	SRR6706287	Light intensity 50%	4.176
	SRR6706288	Light intensity 20%	4.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.260
	CNS0095593	Slightly white alabastrum(diploid) 2	5.054
	CNS0095594	Slightly white alabastrum(diploid) 3	5.288
	CNS0095595	Whole white alabastrum(diploid) 2	3.508
	CNS0095596	Whole white alabastrum(diploid) 3	2.209
	CNS0095597	Whole white alabastrum(diploid) 4	3.532
	CNS0095598	Silvery flower (diploied) 1	4.813
	CNS0095599	Silvery flower (diploied) 2	3.172
	CNS0095600	Silvery flower (diploied) 3	1.736
	CNS0095601	Golden flower (diploid) 1	2.589
	CNS0095602	Golden flower (diploid) 2	1.398
	CNS0095603	Golden flower (diploid) 3	1.422
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.384
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.793
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.809
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.221
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.925
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.691
	CNS0095610	Silvery flower (tetraploid) 1	1.364
	CNS0095611	Silvery flower (tetraploid) 2	1.621
	CNS0095612	Silvery flower (tetraploid) 3	10.285
	CNS0095613	Golden flower (tetraploid) 1	0.667
	CNS0095614	Golden flower (tetraploid) 2	0.810
	CNS0095615	Golden flower (tetraploid) 3	0.190
CRA001975	CRR073297	Stem 1	6.045
	CRR073298	Stem 2	3.821
	CRR073299	Stem 3	3.375
	CRR073300	Leaf 1	4.928
	CRR073301	Leaf 2	4.335
	CRR073302	Leaf 3	2.015
	CRR073303	Juvenile bud 1	3.344
	CRR073304	Juvenile bud 2	2.760
	CRR073305	Juvenile bud 3	2.560
	CRR073306	Third green 1	0.360
	CRR073307	Third green 2	0.103
	CRR073308	Third green 3	0.570
	CRR073309	Second white 1	1.751
	CRR073310	Second white 2	1.892
	CRR073311	Second white 3	2.421
	CRR073312	Silver flowering 1	2.083
	CRR073313	Silver flowering 2	2.768
	CRR073314	Silver flowering 3	1.769
	CRR073315	Gold flowering 1	1.471
	CRR073316	Gold flowering 2	3.246
	CRR073317	Gold flowering 3	1.678
	CRR073318	Tawny withering 1	2.729
	CRR073319	Tawny withering 2	1.826
	CRR073320	Tawny withering 3	2.085