Gene detail

Detail information of GWHGAAZE023167

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008230375.1	0	PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME-like [Prunus mume]
COG	YP_004900624.1	6E-28	esterase
Swissprot	tr\|Q94AS5\|ICME_ARATH	0	Isoprenylcysteine alpha-carbonyl methylesterase ICME
trEMBL	tr\|D7TSK3\|D7TSK3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33475.3}
TAIR10	AT5G15860.1	2E-176	prenylcysteine methylesterase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	924302	930389	+
GWHAAZE00000007	mRNA	924302	930389	+
GWHAAZE00000007	exon	924302	924549	+
GWHAAZE00000007	exon	925506	925582	+
GWHAAZE00000007	exon	926272	926341	+
GWHAAZE00000007	exon	926433	926513	+
GWHAAZE00000007	exon	927968	928042	+
GWHAAZE00000007	exon	928914	929015	+
GWHAAZE00000007	exon	929137	929274	+
GWHAAZE00000007	exon	929506	929571	+
GWHAAZE00000007	exon	929689	929832	+
GWHAAZE00000007	exon	930034	930124	+
GWHAAZE00000007	exon	930228	930389	+
GWHAAZE00000007	CDS	924302	924549	+
GWHAAZE00000007	CDS	925506	925582	+
GWHAAZE00000007	CDS	926272	926341	+
GWHAAZE00000007	CDS	926433	926513	+
GWHAAZE00000007	CDS	927968	928042	+
GWHAAZE00000007	CDS	928914	929015	+
GWHAAZE00000007	CDS	929137	929274	+
GWHAAZE00000007	CDS	929506	929571	+
GWHAAZE00000007	CDS	929689	929832	+
GWHAAZE00000007	CDS	930034	930124	+
GWHAAZE00000007	CDS	930228	930389	+

Transcript Sequence
>GWHTAAZE023197 ATGGGGATTTCGCCGGAGAGACTTGGCTTAACGGAGGAAGAAGTGAAGGTAATGGATACTGATTCATTAGTATCTAGGGTTTCGAGTTACTCCACCGCCACCAACAACCAACGGAGAAGGAAGATTTCCGGCAAAGCGGCGGCGGCTCCGCCACTACGGAGACAGTCGTTTGGTCGCGACATTGGGCATGCGGCTGCCGAGACTTACTTGGTCACTTGGCTTGCTTTTAAGCTCTTAAGATACCTGGGGGTAGGCTACCGTTGGATGACTAGACTCTTTGCCCTATGTTTTTATGCCATGTTACTTATGCCCGGATTTCTTCAAGTTGGATATTACTATTTCTTCTCAAGGCAAGTCCGACGGAGTATTGTCTATGGACATCAACCTAGAAACAGGTTGGATCTGTACTTACCAAAGAACATAGATAGTCCAAAGCCAGTTGTTGCATTTGTAACTGGTGGTGCATGGATTATCGGGTACAAAGCATGGGGTTCTCTCTTAGGACAGCAGTTGGCAGAAAGAGACATTATAGTGGCATGCATTGATTACAGAAATTTTCCTCAGGGGACAATCAGTGATATGGTTGAAGATGCCTCTCAAGGGATCTCTTTTGTATGCAACAATATTGATGAATATGGAGGTGACCCTAACAGGATTTATCTAATGGGTCAATCAGCTGGGGCCCATATCTCTGCTTGTGTTCTCTTGGAGCAGGCAAAAAAAGAATCTGCAGGGGAGAAATGTTCTTGGAGTGTCTCCCAAATAAAAGCTTATTTTGGTTTATCAGGGGGGTACAATTTACTCAACTTAGTTGATCACTTCCATGGTCGTGGCCTGTATCGTTCTATATTTCTGAGCATAATGGAAGGGGAACAATCCTTGCAGCGATTTTCTCCAGAAATTCTGATACAGGAACCTCTCATCAGGAGTTCTGTTTCTACTCTGCCTCGTATCATCCTTTTCCACGGAACTGCAGATATTTCCATACCCTCAGATTCAAGTAAAGCTTTTGTGGAAGCTCTTCAGAAAGTCGGGGCGGAAGCTGAACTAATTTTGTATGATGGAAAAACTCATACAGATTTATTTCTTCAAGATCCTCTGAGAGGTGGTAAAGATGAGCTTTTCGACCACATAGTTGCTTTCATTCATGCCGGTGATAAAGAAGCTCTTGCTAAGGATGCTATGGCGCCTCCAAGAAGACGATTAGTACCCGAGTTTTTGATCAAGTTGGCTAGACATGTGAGCCCCTTTTAA

Network for GWHGAAZE023167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07859.14	Abhydrolase_3	150	358	5.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15889	PCME	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.061
	SRR3591706	second leaf	8.629
	SRR3591707	mature leaf	7.037
	SRR3591708	Shoot apex	15.520
	SRR3591709	Stem	11.303
	SRR3591710	White floral bud	12.585
	SRR3591711	White flower	18.300
	SRR3591712	Green floral bud	8.048
	SRR3591713	Yellow flower	19.389
SRP173429	SRR8316895	Juvenile bud stage	13.150
	SRR8316896	Juvenile bud stage	19.596
	SRR8316897	Juvenile bud stage	7.729
	SRR8316894	Third green stage	7.163
	SRR8316900	Third green stage	15.963
	SRR8316901	Third green stage	18.517
	SRR8316898	Complete white stage	8.989
	SRR8316899	Complete white stage	24.936
	SRR8316903	Complete white stage	10.813
	SRR8316902	Silver flowering stage	11.428
	SRR8316904	Silver flowering stage	14.585
	SRR8316905	Silver flowering stage	8.089
	SRR8316906	Gold flowering stage	30.956
	SRR8316907	Gold flowering stage	30.020
	SRR8316908	Gold flowering stage	28.566
SRP132670	SRR6706286	Control	5.049
	SRR6706287	Light intensity 50%	4.570
	SRR6706288	Light intensity 20%	4.901
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.023
	CNS0095593	Slightly white alabastrum(diploid) 2	16.233
	CNS0095594	Slightly white alabastrum(diploid) 3	17.819
	CNS0095595	Whole white alabastrum(diploid) 2	15.638
	CNS0095596	Whole white alabastrum(diploid) 3	15.662
	CNS0095597	Whole white alabastrum(diploid) 4	16.865
	CNS0095598	Silvery flower (diploied) 1	14.092
	CNS0095599	Silvery flower (diploied) 2	12.921
	CNS0095600	Silvery flower (diploied) 3	17.660
	CNS0095601	Golden flower (diploid) 1	11.106
	CNS0095602	Golden flower (diploid) 2	18.152
	CNS0095603	Golden flower (diploid) 3	18.067
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.374
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.703
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.020
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.530
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.130
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.041
	CNS0095610	Silvery flower (tetraploid) 1	23.733
	CNS0095611	Silvery flower (tetraploid) 2	16.842
	CNS0095612	Silvery flower (tetraploid) 3	15.223
	CNS0095613	Golden flower (tetraploid) 1	16.987
	CNS0095614	Golden flower (tetraploid) 2	23.556
	CNS0095615	Golden flower (tetraploid) 3	22.253
CRA001975	CRR073297	Stem 1	6.744
	CRR073298	Stem 2	5.697
	CRR073299	Stem 3	5.116
	CRR073300	Leaf 1	6.453
	CRR073301	Leaf 2	5.060
	CRR073302	Leaf 3	5.420
	CRR073303	Juvenile bud 1	6.610
	CRR073304	Juvenile bud 2	6.006
	CRR073305	Juvenile bud 3	6.057
	CRR073306	Third green 1	2.022
	CRR073307	Third green 2	2.439
	CRR073308	Third green 3	1.495
	CRR073309	Second white 1	5.117
	CRR073310	Second white 2	3.514
	CRR073311	Second white 3	3.194
	CRR073312	Silver flowering 1	7.726
	CRR073313	Silver flowering 2	7.599
	CRR073314	Silver flowering 3	5.048
	CRR073315	Gold flowering 1	5.797
	CRR073316	Gold flowering 2	7.652
	CRR073317	Gold flowering 3	6.221
	CRR073318	Tawny withering 1	6.364
	CRR073319	Tawny withering 2	5.595
	CRR073320	Tawny withering 3	7.056