Gene detail

Detail information of GWHGAAZE023112

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619351.1	3.4915E-102	PREDICTED: uncharacterized protein LOC104111375 isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9C882\|GTL1_ARATH	0.0000008	Trihelix transcription factor GTL1
trEMBL	tr\|F6HJ64\|F6HJ64_VITVI	1E-99	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52261.1}
TAIR10	AT2G33550.1	5E-54	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	83782846	83785197	-
GWHAAZE00000006	mRNA	83782846	83785197	-
GWHAAZE00000006	exon	83784853	83785197	-
GWHAAZE00000006	exon	83784384	83784486	-
GWHAAZE00000006	exon	83784247	83784291	-
GWHAAZE00000006	exon	83782846	83783126	-
GWHAAZE00000006	CDS	83784853	83785197	-
GWHAAZE00000006	CDS	83784384	83784486	-
GWHAAZE00000006	CDS	83784247	83784291	-
GWHAAZE00000006	CDS	83782846	83783126	-

Transcript Sequence
>GWHTAAZE023142 ATGAGAGCACCGAGACTACCGAGGTGGACGAGACAAGAGATATTGGTGCTGATACAAGGTAAAAGAGTGGCTGAGAACAGGGTGAGGAGGGGGAGGACGGCCGGCCTAGCATTTGGTGGACAAACGGTGGAGCCAAAGTGGGCATCCGTCTCATCTTACTGTAAAAGGCACGGGGTCAACAGAGGGCCCGTTCAATGCAGGAAGAGGTGGAGCAATTTAGCCGGAGACTATAAGAAGATTAAAGAATGGGAAACTATAAGACAAGAAGCGACGACGGAATCATTCTGGGTGATGAGGAACGATTTGAGGAGAGAGAAGAAGTTGCCTGGTTTCTTTGACAGAGAGTTCAAGAAGGAGCATATCCCGATCATTACCATTACCAATACCAATACTTCCACTAGTCTCCTTCAACCCCTACCTGCTCCTATTCCTATTCCTCCATTTTCTGGGAAAGAGAATCACCCATTCACTCAAGGGGTTGGTGTGTCTCCAGGCCACGAGGAACGACACACCTCAAACCCCGATACAGAAACTGCTCGGGAAGGACGAAAGCGGAAACGGGTTCCAACAGATGGAGATGAAGTGGAAGCAAATATGCAGCATAAGTTAATACAAGCCTTGGAAAATAATGGGAGACTTCTGAGCTCCCATCTTGAAGCTCAGAATACCAATTTTCAGTTGGATAGGGAGCAGCGCAAGGACCACATCAATAGCTTAGTTCAAGTTCTTAATAAACTCGCAGATGCTTTCGGGAAGATTGCCGATAAATTGTAG

Network for GWHGAAZE023112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	8	98	2.50E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.099
	SRR3591706	second leaf	8.270
	SRR3591707	mature leaf	10.203
	SRR3591708	Shoot apex	9.129
	SRR3591709	Stem	33.592
	SRR3591710	White floral bud	9.175
	SRR3591711	White flower	10.942
	SRR3591712	Green floral bud	3.716
	SRR3591713	Yellow flower	7.614
SRP173429	SRR8316895	Juvenile bud stage	2.035
	SRR8316896	Juvenile bud stage	3.485
	SRR8316897	Juvenile bud stage	2.378
	SRR8316894	Third green stage	0.801
	SRR8316900	Third green stage	2.244
	SRR8316901	Third green stage	3.411
	SRR8316898	Complete white stage	0.632
	SRR8316899	Complete white stage	7.851
	SRR8316903	Complete white stage	3.950
	SRR8316902	Silver flowering stage	1.536
	SRR8316904	Silver flowering stage	2.855
	SRR8316905	Silver flowering stage	0.936
	SRR8316906	Gold flowering stage	7.512
	SRR8316907	Gold flowering stage	7.800
	SRR8316908	Gold flowering stage	6.474
SRP132670	SRR6706286	Control	3.681
	SRR6706287	Light intensity 50%	4.570
	SRR6706288	Light intensity 20%	3.297
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.794
	CNS0095593	Slightly white alabastrum(diploid) 2	3.813
	CNS0095594	Slightly white alabastrum(diploid) 3	4.387
	CNS0095595	Whole white alabastrum(diploid) 2	4.592
	CNS0095596	Whole white alabastrum(diploid) 3	1.298
	CNS0095597	Whole white alabastrum(diploid) 4	2.971
	CNS0095598	Silvery flower (diploied) 1	14.650
	CNS0095599	Silvery flower (diploied) 2	8.104
	CNS0095600	Silvery flower (diploied) 3	5.676
	CNS0095601	Golden flower (diploid) 1	10.071
	CNS0095602	Golden flower (diploid) 2	8.062
	CNS0095603	Golden flower (diploid) 3	7.901
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.664
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.117
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.275
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.793
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.059
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.729
	CNS0095610	Silvery flower (tetraploid) 1	6.523
	CNS0095611	Silvery flower (tetraploid) 2	4.706
	CNS0095612	Silvery flower (tetraploid) 3	2.629
	CNS0095613	Golden flower (tetraploid) 1	2.054
	CNS0095614	Golden flower (tetraploid) 2	5.461
	CNS0095615	Golden flower (tetraploid) 3	2.045
CRA001975	CRR073297	Stem 1	3.674
	CRR073298	Stem 2	3.643
	CRR073299	Stem 3	3.951
	CRR073300	Leaf 1	2.365
	CRR073301	Leaf 2	2.269
	CRR073302	Leaf 3	1.776
	CRR073303	Juvenile bud 1	3.845
	CRR073304	Juvenile bud 2	1.815
	CRR073305	Juvenile bud 3	4.892
	CRR073306	Third green 1	0.977
	CRR073307	Third green 2	0.359
	CRR073308	Third green 3	1.808
	CRR073309	Second white 1	1.852
	CRR073310	Second white 2	1.973
	CRR073311	Second white 3	1.315
	CRR073312	Silver flowering 1	1.890
	CRR073313	Silver flowering 2	0.982
	CRR073314	Silver flowering 3	2.115
	CRR073315	Gold flowering 1	4.164
	CRR073316	Gold flowering 2	8.751
	CRR073317	Gold flowering 3	8.617
	CRR073318	Tawny withering 1	8.529
	CRR073319	Tawny withering 2	6.254
	CRR073320	Tawny withering 3	9.776