Gene detail

Detail information of GWHGAAZE023096

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHF27223.1	1.14678E-95	NAC transcription factor [Hevea brasiliensis]
Swissprot	tr\|A2YMR0\|NAC10_ORYSI	1E-46	NAC transcription factor ONAC010
trEMBL	tr\|A0A059SWR9\|A0A059SWR9_HEVBR	4E-96	NAC transcription factor {ECO:0000313\|EMBL:AHF27223.1}
TAIR10	AT5G13180.1	3E-58	NAC domain containing protein 83

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	83427219	83428348	+
GWHAAZE00000006	mRNA	83427219	83428348	+
GWHAAZE00000006	exon	83427219	83427367	+
GWHAAZE00000006	exon	83427636	83427897	+
GWHAAZE00000006	exon	83428040	83428348	+
GWHAAZE00000006	CDS	83427219	83427367	+
GWHAAZE00000006	CDS	83427636	83427897	+
GWHAAZE00000006	CDS	83428040	83428348	+

Transcript Sequence
>GWHTAAZE023126 ATGGAGAGGGTTAAAAATGGAGTATTGAGATTGCCTCCTGGGTTTAGGTTCCATCCTACAGACGAAGAGCTTGTGGTTCAGTACCTCAAGCGCAAGGTTTTCTCCTTCCCTGTCCCCGCTTCCATCATCCCCGAGGTTGATGTCTGCAATACCAGGGAAATCAAGTACCCAAATGGGAACCGATCCAACAGAGCAACCGGTTCAGGCTACTGGAAGGCCACCGGATTAGACAAGCAAATTTTAACTTGTAGGACTAATCAATTGGTTGGGATGAAAAAGACACTGGTTTTTTATAGAGGAAAACCCCCACATGGTTCTAGAACCAATTGGATTATGCACGAATATCGCCTCGTTACTCCCCCAATTCCGCCCACCACTCATCCACTTGCCAACAACTCAATCCAGAACCAGCCCCCTTGTGAGATTCAATTAGAAAATTGGGTAATCTGCCGCATATTTTTCAAGAAAAGAAGTGCTAAAAATGAAGAAGAGACCCCAAAATCCCAGAGCGGCAAGCTAAGTCGGAGCCCACCGGTGAACGACAGTAAGCCTGTTTTCTATGATTTCTTGGCCAAGGCGGCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCGGGTTCGAGTGGGATCACCGATGCGTCCTTTAATCAATCGGAGGATCACGATGAAAGCAGTAGTTGCAATAGTACTCTATCCACTTTTAGAAGAAAACCGTGCCCATGA

Network for GWHGAAZE023096

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	12	117	7.90E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.318
	SRR3591706	second leaf	27.820
	SRR3591707	mature leaf	86.915
	SRR3591708	Shoot apex	20.442
	SRR3591709	Stem	102.131
	SRR3591710	White floral bud	23.317
	SRR3591711	White flower	96.257
	SRR3591712	Green floral bud	45.639
	SRR3591713	Yellow flower	182.604
SRP173429	SRR8316895	Juvenile bud stage	8.849
	SRR8316896	Juvenile bud stage	18.204
	SRR8316897	Juvenile bud stage	6.210
	SRR8316894	Third green stage	11.201
	SRR8316900	Third green stage	26.895
	SRR8316901	Third green stage	20.910
	SRR8316898	Complete white stage	2.580
	SRR8316899	Complete white stage	11.814
	SRR8316903	Complete white stage	4.057
	SRR8316902	Silver flowering stage	15.882
	SRR8316904	Silver flowering stage	14.425
	SRR8316905	Silver flowering stage	5.044
	SRR8316906	Gold flowering stage	38.502
	SRR8316907	Gold flowering stage	47.870
	SRR8316908	Gold flowering stage	66.499
SRP132670	SRR6706286	Control	44.438
	SRR6706287	Light intensity 50%	32.937
	SRR6706288	Light intensity 20%	30.897
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.960
	CNS0095593	Slightly white alabastrum(diploid) 2	14.441
	CNS0095594	Slightly white alabastrum(diploid) 3	20.130
	CNS0095595	Whole white alabastrum(diploid) 2	8.688
	CNS0095596	Whole white alabastrum(diploid) 3	7.832
	CNS0095597	Whole white alabastrum(diploid) 4	9.987
	CNS0095598	Silvery flower (diploied) 1	10.403
	CNS0095599	Silvery flower (diploied) 2	8.293
	CNS0095600	Silvery flower (diploied) 3	34.958
	CNS0095601	Golden flower (diploid) 1	15.730
	CNS0095602	Golden flower (diploid) 2	83.849
	CNS0095603	Golden flower (diploid) 3	75.178
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.779
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.691
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.565
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.651
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.733
	CNS0095610	Silvery flower (tetraploid) 1	76.612
	CNS0095611	Silvery flower (tetraploid) 2	61.357
	CNS0095612	Silvery flower (tetraploid) 3	11.987
	CNS0095613	Golden flower (tetraploid) 1	80.890
	CNS0095614	Golden flower (tetraploid) 2	105.108
	CNS0095615	Golden flower (tetraploid) 3	111.115
CRA001975	CRR073297	Stem 1	21.976
	CRR073298	Stem 2	22.383
	CRR073299	Stem 3	26.657
	CRR073300	Leaf 1	10.546
	CRR073301	Leaf 2	12.946
	CRR073302	Leaf 3	11.745
	CRR073303	Juvenile bud 1	6.813
	CRR073304	Juvenile bud 2	1.713
	CRR073305	Juvenile bud 3	8.054
	CRR073306	Third green 1	10.798
	CRR073307	Third green 2	8.496
	CRR073308	Third green 3	13.841
	CRR073309	Second white 1	38.643
	CRR073310	Second white 2	33.734
	CRR073311	Second white 3	33.671
	CRR073312	Silver flowering 1	105.061
	CRR073313	Silver flowering 2	122.006
	CRR073314	Silver flowering 3	100.009
	CRR073315	Gold flowering 1	22.264
	CRR073316	Gold flowering 2	12.541
	CRR073317	Gold flowering 3	12.209
	CRR073318	Tawny withering 1	69.219
	CRR073319	Tawny withering 2	62.147
	CRR073320	Tawny withering 3	45.677