Detail information of GWHGAAZE023036


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010682836.19.70729E-86PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Beta vulgaris subsp. vulgaris]
COGYP_006371395.11E-65NADH dehydrogenase I subunit F
Swissprottr|Q9FNN5|NDUV1_ARATH9E-86NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (Precursor)
trEMBLtr|V4KS86|V4KS86_EUTSA2E-85Uncharacterized protein {ECO:0000313|EMBL:ESQ40805.1}
TAIR10AT5G08530.15E-7151 kDa subunit of complex I

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8238308082383535+
GWHAAZE00000006mRNA8238308082383535+
GWHAAZE00000006exon8238308082383535+
GWHAAZE00000006CDS8238308082383535+
Transcript Sequence

Network for GWHGAAZE023036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01512.18Complex1_51K11193.00E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03942NDUFV1 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0010181molecular_functionFMN binding
GO:0051539molecular_function4 iron, 4 sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf142.370
SRR3591706second leaf103.937
SRR3591707mature leaf112.093
SRR3591708Shoot apex103.130
SRR3591709Stem103.653
SRR3591710White floral bud89.958
SRR3591711White flower93.309
SRR3591712Green floral bud124.954
SRR3591713Yellow flower84.818
SRP173429 SRR8316895Juvenile bud stage 81.932
SRR8316896Juvenile bud stage 122.301
SRR8316897Juvenile bud stage 59.230
SRR8316894Third green stage 46.871
SRR8316900Third green stage 192.671
SRR8316901Third green stage 178.866
SRR8316898Complete white stage 74.141
SRR8316899Complete white stage 151.226
SRR8316903Complete white stage 112.865
SRR8316902Silver flowering stage59.846
SRR8316904Silver flowering stage71.887
SRR8316905Silver flowering stage37.258
SRR8316906Gold flowering stage 149.041
SRR8316907Gold flowering stage 152.454
SRR8316908Gold flowering stage 168.522
SRP132670SRR6706286Control222.887
SRR6706287Light intensity 50%209.264
SRR6706288Light intensity 20%208.698
CNP0000432CNS0095592Slightly white alabastrum(diploid) 176.552
CNS0095593Slightly white alabastrum(diploid) 273.116
CNS0095594Slightly white alabastrum(diploid) 380.611
CNS0095595Whole white alabastrum(diploid) 285.577
CNS0095596Whole white alabastrum(diploid) 393.596
CNS0095597Whole white alabastrum(diploid) 469.448
CNS0095598Silvery flower (diploied) 172.362
CNS0095599Silvery flower (diploied) 277.758
CNS0095600Silvery flower (diploied) 3165.526
CNS0095601Golden flower (diploid) 164.665
CNS0095602Golden flower (diploid) 2127.150
CNS0095603Golden flower (diploid) 3128.825
CNS0095604Slightly white alabastrum(tetraploid) 1129.944
CNS0095605Slightly white alabastrum(tetraploid) 296.385
CNS0095606Slightly white alabastrum(tetraploid) 3194.646
CNS0095607Whole white alabastrum(tetraploid) 196.256
CNS0095608Whole white alabastrum(tetraploid) 2110.827
CNS0095609Whole white alabastrum(tetraploid) 3214.556
CNS0095610Silvery flower (tetraploid) 1278.643
CNS0095611Silvery flower (tetraploid) 2298.904
CNS0095612Silvery flower (tetraploid) 3209.917
CNS0095613Golden flower (tetraploid) 199.376
CNS0095614Golden flower (tetraploid) 2212.214
CNS0095615Golden flower (tetraploid) 381.047
CRA001975CRR073297Stem 1101.791
CRR073298Stem 2108.174
CRR073299Stem 3113.018
CRR073300Leaf 1153.003
CRR073301Leaf 2139.166
CRR073302Leaf 3135.032
CRR073303Juvenile bud 1132.984
CRR073304Juvenile bud 2143.015
CRR073305Juvenile bud 3165.661
CRR073306Third green 193.858
CRR073307Third green 260.294
CRR073308Third green 381.386
CRR073309Second white 1119.010
CRR073310Second white 292.099
CRR073311Second white 376.179
CRR073312Silver flowering 154.811
CRR073313Silver flowering 255.688
CRR073314Silver flowering 344.432
CRR073315Gold flowering 187.980
CRR073316Gold flowering 288.247
CRR073317Gold flowering 373.472
CRR073318Tawny withering 174.227
CRR073319Tawny withering 261.776
CRR073320Tawny withering 360.695