Detail information of GWHGAAZE023015


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009359292.14.5076E-140PREDICTED: mitotic spindle checkpoint protein MAD2 isoform X1 [Pyrus x bretschneideri]
Swissprottr|Q9XFH3|MAD2_MAIZE5E-123Mitotic spindle checkpoint protein MAD2
trEMBLtr|B9HTC2|B9HTC2_POPTR2E-135Uncharacterized protein {ECO:0000313|EMBL:EEF00725.2}
TAIR10AT3G25980.13E-97DNA-binding HORMA family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8204783082049395-
GWHAAZE00000006mRNA8204783082049395-
GWHAAZE00000006exon8204929082049395-
GWHAAZE00000006exon8204916882049183-
GWHAAZE00000006exon8204893482049064-
GWHAAZE00000006exon8204869582048815-
GWHAAZE00000006exon8204824882048599-
GWHAAZE00000006exon8204783082048115-
GWHAAZE00000006five_prime_UTR8204936382049395-
GWHAAZE00000006CDS8204929082049362-
GWHAAZE00000006CDS8204916882049183-
GWHAAZE00000006CDS8204893482049064-
GWHAAZE00000006CDS8204869582048815-
GWHAAZE00000006CDS8204824882048599-
GWHAAZE00000006CDS8204805982048115-
GWHAAZE00000006three_prime_UTR8204783082048058-
Transcript Sequence

Network for GWHGAAZE023015

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02301.19HORMA161561.20E-18
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02537MAD2 Cell cycle map04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.504
SRR3591706second leaf7.272
SRR3591707mature leaf0.700
SRR3591708Shoot apex62.273
SRR3591709Stem11.757
SRR3591710White floral bud1.248
SRR3591711White flower0.794
SRR3591712Green floral bud2.097
SRR3591713Yellow flower0.325
SRP173429 SRR8316895Juvenile bud stage 6.452
SRR8316896Juvenile bud stage 6.232
SRR8316897Juvenile bud stage 6.651
SRR8316894Third green stage 3.386
SRR8316900Third green stage 2.676
SRR8316901Third green stage 1.778
SRR8316898Complete white stage 0.085
SRR8316899Complete white stage 1.427
SRR8316903Complete white stage 0.021
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.134
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.194
SRP132670SRR6706286Control1.647
SRR6706287Light intensity 50%1.576
SRR6706288Light intensity 20%1.729
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.505
CNS0095593Slightly white alabastrum(diploid) 26.108
CNS0095594Slightly white alabastrum(diploid) 32.706
CNS0095595Whole white alabastrum(diploid) 21.799
CNS0095596Whole white alabastrum(diploid) 31.058
CNS0095597Whole white alabastrum(diploid) 41.516
CNS0095598Silvery flower (diploied) 12.671
CNS0095599Silvery flower (diploied) 24.713
CNS0095600Silvery flower (diploied) 30.510
CNS0095601Golden flower (diploid) 10.924
CNS0095602Golden flower (diploid) 20.984
CNS0095603Golden flower (diploid) 31.205
CNS0095604Slightly white alabastrum(tetraploid) 15.164
CNS0095605Slightly white alabastrum(tetraploid) 24.508
CNS0095606Slightly white alabastrum(tetraploid) 39.847
CNS0095607Whole white alabastrum(tetraploid) 14.383
CNS0095608Whole white alabastrum(tetraploid) 20.437
CNS0095609Whole white alabastrum(tetraploid) 30.743
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.571
CNS0095612Silvery flower (tetraploid) 30.064
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.058
CNS0095615Golden flower (tetraploid) 30.004
CRA001975CRR073297Stem 14.094
CRR073298Stem 24.029
CRR073299Stem 36.393
CRR073300Leaf 11.367
CRR073301Leaf 21.284
CRR073302Leaf 30.647
CRR073303Juvenile bud 10.568
CRR073304Juvenile bud 20.578
CRR073305Juvenile bud 30.715
CRR073306Third green 10.012
CRR073307Third green 20.000
CRR073308Third green 30.069
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.118
CRR073317Gold flowering 30.119
CRR073318Tawny withering 17.651
CRR073319Tawny withering 27.263
CRR073320Tawny withering 312.409