Gene detail

Detail information of GWHGAAZE023014

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071308.1	0	PREDICTED: trihelix transcription factor GT-4-like [Sesamum indicum]
Swissprot	tr\|Q9LU92\|TGT4_ARATH	5E-173	Trihelix transcription factor GT-4
trEMBL	tr\|A0A067JSB4\|A0A067JSB4_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP26752.1}
TAIR10	AT3G25990.1	4E-137	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	82037879	82042312	+
GWHAAZE00000006	mRNA	82037879	82042312	+
GWHAAZE00000006	exon	82037879	82038437	+
GWHAAZE00000006	exon	82039647	82039685	+
GWHAAZE00000006	exon	82040704	82040835	+
GWHAAZE00000006	exon	82040955	82041179	+
GWHAAZE00000006	exon	82042107	82042312	+
GWHAAZE00000006	CDS	82037879	82038437	+
GWHAAZE00000006	CDS	82039647	82039685	+
GWHAAZE00000006	CDS	82040704	82040835	+
GWHAAZE00000006	CDS	82040955	82041179	+
GWHAAZE00000006	CDS	82042107	82042312	+

Transcript Sequence
>GWHTAAZE023044 ATGTATTTACCCGATAAACCTCAATCAATCGAAGAAGAAGAAGAACAACAAAGCCGGGATATGATGATAGAAGTCACCGTCAATTCCACCGGACCACTCCCTCCTCACAATCCTCACCACCCAATGATCCTCGCCGACAGCAGTGGCGGAGAAGAAAACCCGGAAATCAAAGCACCGAAAAAGCGGGCGGAGACTTGGGTCCAGGAAGAAACTCGAACTCTCATCAGCTTACGTCGAGAGAAAGACTCTCTATTCAACACTTCAAAGTCGAACAAGCACTTGTGGGACCAGATTTCGATGAAGATGCGAGAGAAGGGATTCGATCGGTCACCGACCATGTGTACCGACAAGTGGAGGAATCTTTTGAAGGAGTTTAAAAAGACGAAACAGCAGCAGGATCGAGGAGGAGGAGGGGGGAGTGGTTCGGCTAAGATGTCGTATTATAAAGAAATCGAGGAGATTCTTAAAGATAGAAGCAAGACTGTGGGTTTGGGGACTCCTTACAAGAGTCCTTCTTCGGGTTCCAAGGTCGATTCCTACATGCAATTTTCTGATAAAGTTATTGACGACACAAGTATTACATTTGGACCCGTGGAAGCTAACGGAAGGGCAACACTGAATCTAGAAAGGCAATTGGATCATGATGGTCATCCTCTTGCTATCACCGCAGCTGATGCTGTTGCAGCTAGTGGGATTTCTCCTTGGAGTTGGAGAGAGACTCCTGGAAATGGTGAGCAAAGTAACACATATGATGGGAGGGTTATAACAGTGAAGTTGGGGGATTACACAAAAAGAATTGGGATTGATGCCAGTGTAGATGCCATCAAGGAAGCGATTAAATCCACTTTTAGGTTAAGAACAAAGCGTGCATTTTGGTTGGAAGATGAAGATAATATAGTGCGAGCTCTTGATAGGGACATGCCTTTGGGGAACTACACTCTCCATGTTGATGAAGGTTTGACGATAAAAGTTTGCCTGTATGAGGAGCCAGATCATATGCCAGTGCATACGGAGGACAAGACATTCTACACGGAAGAGGATTATCGTGAGTTCCTGAGCCGTAGGGGGTGGACATGTTTGAGAGAGTATAGTGGGTACAATAGGAACATTGATAGTATGGATGAGCTTTGCCCTGGTGCCATATACCGCGGTGTTAACTAG

Network for GWHGAAZE023014

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	65	154	9.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.825
	SRR3591706	second leaf	5.222
	SRR3591707	mature leaf	5.798
	SRR3591708	Shoot apex	13.220
	SRR3591709	Stem	9.224
	SRR3591710	White floral bud	13.296
	SRR3591711	White flower	17.505
	SRR3591712	Green floral bud	9.771
	SRR3591713	Yellow flower	11.932
SRP173429	SRR8316895	Juvenile bud stage	7.265
	SRR8316896	Juvenile bud stage	10.326
	SRR8316897	Juvenile bud stage	5.569
	SRR8316894	Third green stage	5.749
	SRR8316900	Third green stage	12.723
	SRR8316901	Third green stage	12.480
	SRR8316898	Complete white stage	8.459
	SRR8316899	Complete white stage	17.086
	SRR8316903	Complete white stage	13.967
	SRR8316902	Silver flowering stage	7.876
	SRR8316904	Silver flowering stage	10.957
	SRR8316905	Silver flowering stage	6.617
	SRR8316906	Gold flowering stage	23.093
	SRR8316907	Gold flowering stage	16.140
	SRR8316908	Gold flowering stage	20.141
SRP132670	SRR6706286	Control	18.455
	SRR6706287	Light intensity 50%	14.778
	SRR6706288	Light intensity 20%	16.106
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.119
	CNS0095593	Slightly white alabastrum(diploid) 2	8.225
	CNS0095594	Slightly white alabastrum(diploid) 3	9.062
	CNS0095595	Whole white alabastrum(diploid) 2	8.846
	CNS0095596	Whole white alabastrum(diploid) 3	6.553
	CNS0095597	Whole white alabastrum(diploid) 4	9.290
	CNS0095598	Silvery flower (diploied) 1	18.728
	CNS0095599	Silvery flower (diploied) 2	12.942
	CNS0095600	Silvery flower (diploied) 3	20.663
	CNS0095601	Golden flower (diploid) 1	22.147
	CNS0095602	Golden flower (diploid) 2	19.721
	CNS0095603	Golden flower (diploid) 3	16.901
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.770
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.047
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.278
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.679
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.858
	CNS0095610	Silvery flower (tetraploid) 1	27.606
	CNS0095611	Silvery flower (tetraploid) 2	25.541
	CNS0095612	Silvery flower (tetraploid) 3	14.780
	CNS0095613	Golden flower (tetraploid) 1	17.750
	CNS0095614	Golden flower (tetraploid) 2	23.452
	CNS0095615	Golden flower (tetraploid) 3	20.951
CRA001975	CRR073297	Stem 1	18.115
	CRR073298	Stem 2	15.698
	CRR073299	Stem 3	18.423
	CRR073300	Leaf 1	16.344
	CRR073301	Leaf 2	14.516
	CRR073302	Leaf 3	14.988
	CRR073303	Juvenile bud 1	16.271
	CRR073304	Juvenile bud 2	17.639
	CRR073305	Juvenile bud 3	16.556
	CRR073306	Third green 1	6.035
	CRR073307	Third green 2	3.797
	CRR073308	Third green 3	4.989
	CRR073309	Second white 1	4.553
	CRR073310	Second white 2	4.768
	CRR073311	Second white 3	4.212
	CRR073312	Silver flowering 1	2.537
	CRR073313	Silver flowering 2	4.061
	CRR073314	Silver flowering 3	2.652
	CRR073315	Gold flowering 1	8.507
	CRR073316	Gold flowering 2	8.489
	CRR073317	Gold flowering 3	6.729
	CRR073318	Tawny withering 1	12.032
	CRR073319	Tawny withering 2	5.636
	CRR073320	Tawny withering 3	9.263