Gene detail

Detail information of GWHGAAZE022991

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009780906.1	5.9493E-164	PREDICTED: actin-related protein 3-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9SAF1\|ARP3_ARATH	9E-154	Actin-related protein 3
trEMBL	tr\|W5GHM5\|W5GHM5_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_6BL_033E8282D.2}
TAIR10	AT1G13180.1	1E-108	Actin-like ATPase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81675332	81680330	+
GWHAAZE00000006	mRNA	81675332	81680330	+
GWHAAZE00000006	exon	81675332	81675384	+
GWHAAZE00000006	exon	81675462	81675924	+
GWHAAZE00000006	exon	81676362	81676532	+
GWHAAZE00000006	exon	81676781	81676927	+
GWHAAZE00000006	exon	81678194	81678286	+
GWHAAZE00000006	exon	81678443	81678562	+
GWHAAZE00000006	exon	81678830	81678940	+
GWHAAZE00000006	exon	81679637	81679762	+
GWHAAZE00000006	exon	81679850	81679948	+
GWHAAZE00000006	exon	81680250	81680330	+
GWHAAZE00000006	CDS	81675332	81675384	+
GWHAAZE00000006	CDS	81675462	81675924	+
GWHAAZE00000006	CDS	81676362	81676532	+
GWHAAZE00000006	CDS	81676781	81676927	+
GWHAAZE00000006	CDS	81678194	81678286	+
GWHAAZE00000006	CDS	81678443	81678562	+
GWHAAZE00000006	CDS	81678830	81678940	+
GWHAAZE00000006	CDS	81679637	81679762	+
GWHAAZE00000006	CDS	81679850	81679948	+
GWHAAZE00000006	CDS	81680250	81680330	+

Transcript Sequence
>GWHTAAZE023021 ATGGACCACCCTGCCACCACTCGCCCCGCTGTAGTCATTGACAACGGCACCGGATATTCTAAAATGGGATTTGCGGGTAACGCGGAGCCGTGCTTTACCCTCCCCACCGTTGTTGCGGTTAACGAGTCCTTCTTAAACCAACCCCGTAGCTCAGTTAAGGCTAGTAATTGGGTTTTGCAGCACAACGCTGGGGTCATGGCGGATCTCGATTTCTTTATTGGGGATGAAGCTATCTCCAAATCTCGATCTAGTACTACTTATAATCTTACTTTTCCTATTCGGCAAGGCCAGGTTGATAACTGGGATGCAATGGAGCGCTTTTGGCAACAATGTATATTCAATTACTTGCGTTGTGATCCAGAGGATCATTATTTTCTCTTGACTGAAACTCCGCTTACTCCCCCCGAGACTCGCGAGTACACTGGCGAGATTATGTTCGAGACTTTCAATGTTCCGGGCCTTTATATCGCCGTCCAACCGGTACTTGCTCTAGCAGCAGGTTACAATACATCTAAGGAACTAGACATGCATCATGACCAATGCATCTGCATTTCTCATTATCATCCTCCTCCTATCGAGTCTTATATGCCAAGGTACAAGTCAACAAATGGACGTATTTGCTGGAGCGGAGTTTACATGGAAACTTACTGTGTCACTCCAGTTCCCAAAAGGGGAAAGATTACCTTGTGTGAGATGACAGGGGTTGTGGTAGATGTTGGAGATGGGGCTACTCATGTTGTACCTGTTGCAGAAGGTTATGTTATTGGGAGCAGCATTAAGTCAATTCCAATTTCTGGGGAAAATGTTACTCTCTTCATTCAGCAACTAATGCGGGAAAGAGGAGAACATATTCCGGCTGAAGATTCCCTTGAAGTAGCTCGAAAAGTTAAGGAAATGTATTGCTACACCTCCTCTGATATTGTCAAGGAGTTCAATAAACATGACAAAAAACCAGACAAGTACATTAAGCAATGGAGAGGCATTAAAGAGAAGACTAGGGCCCCATACACTTGTGATATTGGCTATGAACGATTTCTTGGTCCTGAGGTTTTTTTCAATCCTGAGATATGCAATAGTGACTTTACTACCCCTTTACCTGATGTGATAGACAAGTGTATTCAGTCTGCACCAATTGACACGAGAAGGGATTTGTATAAGAATATAGTGTTGTCTGGAGGATCAACCATGTTCAAAGACTTCCACAAAAGGTTGCAACGGGATGTAAAGAAGATAGTGGATGCTCGGTTTTTTGCATCCGTTGCTAGGCCTGACGGTGATGTGAAAGCACAGCCTGTGGAAGTCAATGTAGTCAACAATCCTATCCAGAGCTATGCAGTTTGGTTTGGGGGCTCTGTACTTGCATCAACACCTGAATTCTTCACCGCCTGCCATACAAAAGCCGAGTACGAGGAACACGGTGCGACTATTTGCCGTACAAATCCCATTTTCAAGGGAATGTATTGA

Network for GWHGAAZE022991

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00022.20	Actin	9	478	7.90E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18584	ACTR3, ARP3	Autophagy - yeast	map04138
K18584	ACTR3, ARP3	Tight junction	map04530

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.563
	SRR3591706	second leaf	0.530
	SRR3591707	mature leaf	0.073
	SRR3591708	Shoot apex	0.522
	SRR3591709	Stem	0.516
	SRR3591710	White floral bud	0.829
	SRR3591711	White flower	0.445
	SRR3591712	Green floral bud	9.339
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.537
	SRR8316896	Juvenile bud stage	13.619
	SRR8316897	Juvenile bud stage	5.753
	SRR8316894	Third green stage	4.054
	SRR8316900	Third green stage	11.783
	SRR8316901	Third green stage	14.575
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.071
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.045
	SRR8316905	Silver flowering stage	0.032
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.067
	SRR8316908	Gold flowering stage	0.049
SRP132670	SRR6706286	Control	3.808
	SRR6706287	Light intensity 50%	3.514
	SRR6706288	Light intensity 20%	2.760
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.914
	CNS0095593	Slightly white alabastrum(diploid) 2	10.755
	CNS0095594	Slightly white alabastrum(diploid) 3	14.601
	CNS0095595	Whole white alabastrum(diploid) 2	12.460
	CNS0095596	Whole white alabastrum(diploid) 3	18.362
	CNS0095597	Whole white alabastrum(diploid) 4	11.918
	CNS0095598	Silvery flower (diploied) 1	0.026
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.001
	CNS0095601	Golden flower (diploid) 1	0.295
	CNS0095602	Golden flower (diploid) 2	0.059
	CNS0095603	Golden flower (diploid) 3	0.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.889
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.256
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.603
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.489
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.923
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.427
	CNS0095610	Silvery flower (tetraploid) 1	0.078
	CNS0095611	Silvery flower (tetraploid) 2	0.143
	CNS0095612	Silvery flower (tetraploid) 3	0.151
	CNS0095613	Golden flower (tetraploid) 1	0.075
	CNS0095614	Golden flower (tetraploid) 2	0.058
	CNS0095615	Golden flower (tetraploid) 3	0.091
CRA001975	CRR073297	Stem 1	4.886
	CRR073298	Stem 2	4.567
	CRR073299	Stem 3	2.171
	CRR073300	Leaf 1	6.177
	CRR073301	Leaf 2	6.041
	CRR073302	Leaf 3	5.590
	CRR073303	Juvenile bud 1	1.872
	CRR073304	Juvenile bud 2	1.460
	CRR073305	Juvenile bud 3	0.067
	CRR073306	Third green 1	0.138
	CRR073307	Third green 2	0.249
	CRR073308	Third green 3	0.083
	CRR073309	Second white 1	0.008
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.036
	CRR073313	Silver flowering 2	0.109
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.267
	CRR073316	Gold flowering 2	0.168
	CRR073317	Gold flowering 3	0.076
	CRR073318	Tawny withering 1	0.667
	CRR073319	Tawny withering 2	0.886
	CRR073320	Tawny withering 3	0.958