Gene detail

Detail information of GWHGAAZE022968

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071150.1	0	PREDICTED: uncharacterized protein LOC105156648 [Sesamum indicum]
COG	YP_004985011.1	1E-11	glycosyl transferase group 1 (modular protein), partial
trEMBL	tr\|A0A068UXJ8\|A0A068UXJ8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_74 {ECO:0000313\|EMBL:CDP13230.1}
TAIR10	AT1G12990.1	3E-178	beta-1,4-N-acetylglucosaminyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81376459	81377535	+
GWHAAZE00000006	mRNA	81376459	81377535	+
GWHAAZE00000006	exon	81376459	81377535	+
GWHAAZE00000006	CDS	81376459	81377535	+

Transcript Sequence
>GWHTAAZE022998 ATGTCAAGAGTACGTTGTGTTCTTCGTGGGCTGGATTTGAAGGCATTTATCTTCTTTTTTGTGCTAGTCCCGACGTGCGTCGTCAGTATATATTTTCACGGTCAGAAAATCTCTTACTTTCTGCGGCCACTATGGGAATCACCGCCCAAACCATTCCATGAAATTCCACACTATTATCATGAGAATGTTTCTATGGAAAATTTATGCAAACTTCACGGTTGGAGAATCCGAGAGTTCCCAAGGCGAGTCTTTGATGCAGTGTTGTTCAGCAACGAGCTGGATCTCCTTACCATAAGATGGAAGGAATTGTACCCTTACCTAACAGAGTTTGTTCTCCTCGAGTCAAATTCAACATTTACAGGATTGCCAAAGCCCCTGGTCTTTGCCAGCAATCGAGATCAGTTTAAATTTGTTGAGCCAAGGTTGACTTATGGGAAAATTCCGGGGAGATTTAAGAATGGACAAAACCCATTTGTTGAAGAGGCGTATCAACGGCTAGCATTGGACTTTCTTTTGAAAAAAGCCGGCATCCAAGATGATGACTTGTTGTTAATGTCGGATGTTGATGAAATACCAAGTAGACACACTATCAATCTCTTGAGGTGGTGTGATGATATACCTCCAGTCCTTCATCTTCGCTTAAATAACTATTTATACTCGTTTGAGTTTCTTGTGGACGATAATAGCTGGAGAGCTTCGGTTCACGTATACCAGTCTGGTAAGACAATGTATGCCCATTATCGCCAGTCCGACGAGATCTTGGCCGATGCAGGGTGGCATTGTAGCTTTTGCTTCCGTCGTATCAGCGAGTTTATATTTAAGATGAAAGCTTACAGTCATTTCGACAGAGTGAGGTTCTCGAATTATTTGAACCCAAAAAGAATTCAGAATAAAATTTGCCAAGGGGCTGACCTCTTTGATATGTTGCCCGAGAAGTATACGTTCCAAGAAATCATTGGGAAAATGGGACCCATTCCCCATTCCTATTCTGCCGTTCATCTTCCTGCGTACCTTTTGGAGAATGCCGGAAAGTACAAGTTTCTTTTGCCCGGAAATTGCTTGAGAGAGAGTGGTTGA

Network for GWHGAAZE022968

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04724.14	Glyco_transf_17	11	356	4.30E-183

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00737	MGAT3	Metabolic pathways	map01100
K00737	MGAT3	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0006487	biological_process	protein N-linked glycosylation
GO:0016020	cellular_component	membrane
GO:0003830	molecular_function	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.642
	SRR3591706	second leaf	4.825
	SRR3591707	mature leaf	4.223
	SRR3591708	Shoot apex	14.051
	SRR3591709	Stem	10.723
	SRR3591710	White floral bud	14.508
	SRR3591711	White flower	16.240
	SRR3591712	Green floral bud	21.264
	SRR3591713	Yellow flower	10.367
SRP173429	SRR8316895	Juvenile bud stage	19.101
	SRR8316896	Juvenile bud stage	32.585
	SRR8316897	Juvenile bud stage	13.551
	SRR8316894	Third green stage	7.141
	SRR8316900	Third green stage	19.395
	SRR8316901	Third green stage	22.890
	SRR8316898	Complete white stage	7.747
	SRR8316899	Complete white stage	22.689
	SRR8316903	Complete white stage	12.045
	SRR8316902	Silver flowering stage	7.746
	SRR8316904	Silver flowering stage	9.132
	SRR8316905	Silver flowering stage	5.608
	SRR8316906	Gold flowering stage	13.749
	SRR8316907	Gold flowering stage	12.492
	SRR8316908	Gold flowering stage	11.803
SRP132670	SRR6706286	Control	5.512
	SRR6706287	Light intensity 50%	5.221
	SRR6706288	Light intensity 20%	6.852
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.517
	CNS0095593	Slightly white alabastrum(diploid) 2	16.885
	CNS0095594	Slightly white alabastrum(diploid) 3	27.080
	CNS0095595	Whole white alabastrum(diploid) 2	21.056
	CNS0095596	Whole white alabastrum(diploid) 3	20.912
	CNS0095597	Whole white alabastrum(diploid) 4	23.976
	CNS0095598	Silvery flower (diploied) 1	21.749
	CNS0095599	Silvery flower (diploied) 2	16.031
	CNS0095600	Silvery flower (diploied) 3	16.818
	CNS0095601	Golden flower (diploid) 1	12.646
	CNS0095602	Golden flower (diploid) 2	15.867
	CNS0095603	Golden flower (diploid) 3	15.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.719
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.745
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.277
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.920
	CNS0095610	Silvery flower (tetraploid) 1	5.900
	CNS0095611	Silvery flower (tetraploid) 2	6.655
	CNS0095612	Silvery flower (tetraploid) 3	11.069
	CNS0095613	Golden flower (tetraploid) 1	3.950
	CNS0095614	Golden flower (tetraploid) 2	6.509
	CNS0095615	Golden flower (tetraploid) 3	6.516
CRA001975	CRR073297	Stem 1	19.446
	CRR073298	Stem 2	18.535
	CRR073299	Stem 3	22.616
	CRR073300	Leaf 1	22.568
	CRR073301	Leaf 2	26.219
	CRR073302	Leaf 3	18.404
	CRR073303	Juvenile bud 1	21.992
	CRR073304	Juvenile bud 2	21.634
	CRR073305	Juvenile bud 3	31.669
	CRR073306	Third green 1	25.260
	CRR073307	Third green 2	28.122
	CRR073308	Third green 3	21.661
	CRR073309	Second white 1	28.298
	CRR073310	Second white 2	22.319
	CRR073311	Second white 3	24.527
	CRR073312	Silver flowering 1	35.176
	CRR073313	Silver flowering 2	27.299
	CRR073314	Silver flowering 3	27.087
	CRR073315	Gold flowering 1	5.835
	CRR073316	Gold flowering 2	10.696
	CRR073317	Gold flowering 3	5.431
	CRR073318	Tawny withering 1	15.883
	CRR073319	Tawny withering 2	18.193
	CRR073320	Tawny withering 3	15.729