Gene detail

Detail information of GWHGAAZE022953

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001268094.1	0	uncharacterized protein LOC100261274 [Vitis vinifera]
COG	YP_004628567.1	3E-45	tyrosine/nicotianamine aminotransferase
Swissprot	tr\|Q9S7E9\|GGT2_ARATH	0	Glutamate--glyoxylate aminotransferase 2
trEMBL	tr\|Q45RS3\|Q45RS3_VITVI	0	AlaT1 {ECO:0000313\|EMBL:AAZ43369.1}
TAIR10	AT1G70580.4	0	alanine-2-oxoglutarate aminotransferase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81128688	81133390	+
GWHAAZE00000006	mRNA	81128688	81133390	+
GWHAAZE00000006	exon	81128688	81128804	+
GWHAAZE00000006	exon	81129281	81129346	+
GWHAAZE00000006	exon	81129452	81129569	+
GWHAAZE00000006	exon	81129981	81130062	+
GWHAAZE00000006	exon	81130173	81130260	+
GWHAAZE00000006	exon	81130519	81130677	+
GWHAAZE00000006	exon	81130901	81131074	+
GWHAAZE00000006	exon	81131164	81131295	+
GWHAAZE00000006	exon	81131591	81131656	+
GWHAAZE00000006	exon	81131733	81131797	+
GWHAAZE00000006	exon	81132723	81132814	+
GWHAAZE00000006	exon	81132896	81133052	+
GWHAAZE00000006	exon	81133261	81133390	+
GWHAAZE00000006	CDS	81128688	81128804	+
GWHAAZE00000006	CDS	81129281	81129346	+
GWHAAZE00000006	CDS	81129452	81129569	+
GWHAAZE00000006	CDS	81129981	81130062	+
GWHAAZE00000006	CDS	81130173	81130260	+
GWHAAZE00000006	CDS	81130519	81130677	+
GWHAAZE00000006	CDS	81130901	81131074	+
GWHAAZE00000006	CDS	81131164	81131295	+
GWHAAZE00000006	CDS	81131591	81131656	+
GWHAAZE00000006	CDS	81131733	81131797	+
GWHAAZE00000006	CDS	81132723	81132814	+
GWHAAZE00000006	CDS	81132896	81133052	+
GWHAAZE00000006	CDS	81133261	81133390	+

Transcript Sequence
>GWHTAAZE022983 ATGTCATCTAAGGCATTGGATTATGACTCTTTGAATGAAAATGTGAAGAAGGCTCAGTATGCTGTCAGAGGGGAGTTGTATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATTATCTTCACAAATGTTGGCAATCCTCATGCCCTAGGGCAGAAGCCTCTAACTTTCCCTCGACAGGTGGTCGCTCTCTGCCAAGCTCCATTTCTACTGGATGATCCTAATGTGGGACTTGTATTCCCTGCTGACACAATTGCAAGAGCTAAGCATTATCTTTCACTGACCTCCGGGGGTCTAGGTGCCTACAGTGACTCGCGTGGTCTTCCTGGAATAAGGAAAGAAGTGGCTGAGTTCATCGAGAGGCGTGATGGGTATCCGAGTGATCCAGAACTCATATATCTCACTGATGGTGCCAGCAAAGGAGTAATGCAGATCTTGCAAACTATTATACGTGGTCCAAGTGATGGGATTTTGGTTCCTGTTCCACAATATCCGCTATACTCAGCTGCAATATCTTTATTTGGTGGCTCTCTTGTTCCATATTACCTGGAAGAGACAGCTAATTGGGGTCTTGACGTTAATAACCTTCGCCAGTCAGTTTCACAAGCTCGCTCAAAAGGAATGACAGTAAGGGCAATGGTCATTATAAACCCAGGAAATCCCACTGGACAGTGTCTTAGTGAAGCCAATCTGAAGGAAATATTAATGTTCTGTTACCATGAGAAACTGGTCTTGCTCGGGGATGAAGTTTATCAGCAGAATATTTACCAGGATGAGCGCCCTTTTATAAGTTCAAGGAAGGTTTTGATGGAAATGGGCCCACCCATAAGCAAGGACGTCCAGCTGATTTCTTTTCACACTGTATCCAAAGGTTATTGGGGTGAATGCGGACAGCGTGGAGGCTACTTTGAGATGACCAACATTCCTCCACAGACGGTTGATGAAATCTACAAGGTTGCATCAATTTCACTCAGTCCGAATGTTCCTGGGCAGATATTTATGGGAGTAATGGTCAACCCTCCTAAACCCGGAGATATCTCTTATGATAGGTTTATTAGAGAGAGCAAAGGAGTCCTCGAGTCATTGAGGAGGAGAGCCCAAATAATGACTGATGGGTTCAACAGCTGCAGAAACGTGGTTTGTAATTTCACGGAAGGTGCCATGTATTCTTTCCCACAAATACGCTTGCCTCCAAAAGCTATAGAAGCTGCAAAAAAGGCTGGAAAAGTTCCTGATGTTTTCTATTGCCTCAAGCTTTTAGAAGCCACAGGCATTTCCACTGTCCCAGGTTCAGGGTTCGGGCAAAAGGAAGGGGTGTTCCATCTGAGAACGACCATCTTACCAGCTGAAGAGGAGATGCCTGCAATAATGGAGAGTTTCAAGAAGTTCAATGACGAGTTCATGGAGCAATATGAAGACTACAGAGGCTATTCGAGGATGTAA

Network for GWHGAAZE022953

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	88	452	4.40E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14272	GGAT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation in photosynthetic organisms	map00710
		Alanine, aspartate and glutamate metabolism	map00250
		Glycine, serine and threonine metabolism	map00260
		Arginine biosynthesis	map00220

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	208.642
	SRR3591706	second leaf	777.285
	SRR3591707	mature leaf	1294.691
	SRR3591708	Shoot apex	267.736
	SRR3591709	Stem	200.947
	SRR3591710	White floral bud	56.465
	SRR3591711	White flower	71.972
	SRR3591712	Green floral bud	63.763
	SRR3591713	Yellow flower	52.524
SRP173429	SRR8316895	Juvenile bud stage	99.621
	SRR8316896	Juvenile bud stage	122.883
	SRR8316897	Juvenile bud stage	65.553
	SRR8316894	Third green stage	48.689
	SRR8316900	Third green stage	123.128
	SRR8316901	Third green stage	116.915
	SRR8316898	Complete white stage	45.719
	SRR8316899	Complete white stage	143.184
	SRR8316903	Complete white stage	64.742
	SRR8316902	Silver flowering stage	22.496
	SRR8316904	Silver flowering stage	32.594
	SRR8316905	Silver flowering stage	14.442
	SRR8316906	Gold flowering stage	36.634
	SRR8316907	Gold flowering stage	40.015
	SRR8316908	Gold flowering stage	47.313
SRP132670	SRR6706286	Control	107.902
	SRR6706287	Light intensity 50%	104.942
	SRR6706288	Light intensity 20%	109.816
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	67.095
	CNS0095593	Slightly white alabastrum(diploid) 2	58.849
	CNS0095594	Slightly white alabastrum(diploid) 3	62.843
	CNS0095595	Whole white alabastrum(diploid) 2	54.873
	CNS0095596	Whole white alabastrum(diploid) 3	52.374
	CNS0095597	Whole white alabastrum(diploid) 4	56.012
	CNS0095598	Silvery flower (diploied) 1	114.730
	CNS0095599	Silvery flower (diploied) 2	97.770
	CNS0095600	Silvery flower (diploied) 3	93.593
	CNS0095601	Golden flower (diploid) 1	92.205
	CNS0095602	Golden flower (diploid) 2	96.769
	CNS0095603	Golden flower (diploid) 3	92.887
	CNS0095604	Slightly white alabastrum(tetraploid) 1	77.962
	CNS0095605	Slightly white alabastrum(tetraploid) 2	72.879
	CNS0095606	Slightly white alabastrum(tetraploid) 3	116.736
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	40.652
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.811
	CNS0095610	Silvery flower (tetraploid) 1	123.858
	CNS0095611	Silvery flower (tetraploid) 2	143.268
	CNS0095612	Silvery flower (tetraploid) 3	61.161
	CNS0095613	Golden flower (tetraploid) 1	50.422
	CNS0095614	Golden flower (tetraploid) 2	80.206
	CNS0095615	Golden flower (tetraploid) 3	23.512
CRA001975	CRR073297	Stem 1	161.412
	CRR073298	Stem 2	138.003
	CRR073299	Stem 3	171.175
	CRR073300	Leaf 1	78.534
	CRR073301	Leaf 2	84.313
	CRR073302	Leaf 3	69.381
	CRR073303	Juvenile bud 1	94.206
	CRR073304	Juvenile bud 2	52.947
	CRR073305	Juvenile bud 3	111.042
	CRR073306	Third green 1	12.984
	CRR073307	Third green 2	13.681
	CRR073308	Third green 3	16.660
	CRR073309	Second white 1	19.551
	CRR073310	Second white 2	12.918
	CRR073311	Second white 3	6.597
	CRR073312	Silver flowering 1	7.022
	CRR073313	Silver flowering 2	14.628
	CRR073314	Silver flowering 3	8.631
	CRR073315	Gold flowering 1	1092.187
	CRR073316	Gold flowering 2	1437.493
	CRR073317	Gold flowering 3	1116.415
	CRR073318	Tawny withering 1	107.332
	CRR073319	Tawny withering 2	111.951
	CRR073320	Tawny withering 3	73.809