Gene detail

Detail information of GWHGAAZE022938

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011071124.1	0	PREDICTED: high affinity nitrate transporter 2.5 [Sesamum indicum]
COG	YP_677931.1	4E-104	nitrate/nitrite transporter
Swissprot	tr\|Q9LPV5\|NRT25_ARATH	0	High affinity nitrate transporter 2.5
trEMBL	tr\|I1X3V4\|I1X3V4_GOSHI	0	Nitrate transporter {ECO:0000313\|EMBL:AFI74368.1}
TAIR10	AT1G12940.1	0	nitrate transporter2.5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80908078	80910246	-
GWHAAZE00000006	mRNA	80908078	80910246	-
GWHAAZE00000006	exon	80908078	80908450	-
GWHAAZE00000006	exon	80909090	80910246	-
GWHAAZE00000006	CDS	80909090	80910246	-
GWHAAZE00000006	CDS	80908078	80908450	-

Transcript Sequence
>GWHTAAZE022968 ATGGAGGAAACTAAAAATCACTCTCACGATGAAATCAACTCTGGCCAACAAAATTTTGCTACTCTGGTGGACTCTGAACACAAGGCAACAGAATTCAGAGTGTTCTCATTGGCAGCCCCTCACATGAGGGCATTTCATCTATCGTGGATTTCCTTCTTTTCTTGCTTTGTTTCCACCTTTGCCGCTCCACCCCTTTTGCCTATCATTCGAGACAACCTCGACTTGACAGCCACTGACATAGGAAATGCGGGAATTGCAGCAGTTTCAGGTGCAGTCTTTGCCCGAATTGTTATGGGGACCGCTTGCGACTTGTTCGGGCCCCGCCTCGCCTCTGCCTCGATCATCCTTCTCACAACGCCTGCAGTTTACTGCAGCGCCATGGCCAACTCAGCTGTCTCCTTCCTCTTTGTACGTTTTTTCACCGGTTTCTCTCTTTCCACATTTGTGTCGACCCAATATTGGATGAGCTCCATGTTCTCGGGTCAAGTTGTCGGCACCGCCAATGGTGTAGCTGGTGGTTGGGGAAATCTCGGGGGTGGTGCTACCCAGCTCATTATGCCCCTTGTGTTTTCCCTTATTCGGAACACTGGGGCAACTCAATTCACGGCCTGGAGAATTGCGTTCTTTATTCCGGCCCTCTTTCAAACCTTAGCGGCTTATGCTGTTTTCCTCTTGGGCCAAGACTTGCCAGATGGGAACTTCTCAAAACTGGAGAAAAAAGGGGACAAGCACAAAGAAAGTTTTTTGCAGGTTTTTTATCACGCAATCACAAATTATAGAGGGTGGGTCTTGGCATTGACTTATGGGTATTGTTTTGGGGTCGAACTGACTGTCGATAACATAATAGCGCAGTACTTTTATGACAGATTCAATGTGAGTCTTCACACTGCAGGAATTATTGCAGCCAGTTTTGGGTTGGCAAATATAATTTCGAGACCTGGAGGGGGGTTTCTCTCGGACGTGGTGGGGAAGAGGTTTGGGATGAGAGGTAGGCTTTGGATCCTATGGCTAGTACAGGTATTGGGAGGTATGTTCTGTATACTCCTAGGGAAAGTGGCATCTTTAAGTGCATCAGTTGCTGTGATGATTGTGTTTTCTGTGTTTGTTCAAGCTGCATGCGGCCTTACATTTGGAGTAGTTCCATTTGTCTCCAGGAGGTCCCTGGGGGTAATATCTGGGATGACAGGTGGTGGTGGAAACGTAGGTGCAGTTCTAACTCAAGTAATTTTCTTTAGAGGAACGAGATACTCGACAGAAACAGGGATTACTCTGATGGGCGTCATGATTATATGTTGCACCCTCCCAATATGGTTGATTTACTTCCCACAATGGGGAGGGATGCTTTGTGGCCCATCATCTAGAGGCACCACAGAAGAAGACTACTATATGTCTGAATGGAATTCGGAAGAGAAAGATAACGGTTTCCATAAGGCAAGCTTGAAATTTGCCAGTAACAGCAGGAGTGAAAGAGGTAAAATGGCGGATTTCGCACCCACCATATCCAGTGGGACTCCACCTACAAATGTCTGA

Network for GWHGAAZE022938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07690.17	MFS_1	49	405	2.50E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02575	NRT, narK, nrtP, nasA	Nitrogen metabolism	map00910

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0005887	cellular_component	integral component of plasma membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.864
	SRR3591706	second leaf	5.373
	SRR3591707	mature leaf	14.480
	SRR3591708	Shoot apex	4.356
	SRR3591709	Stem	0.886
	SRR3591710	White floral bud	0.991
	SRR3591711	White flower	1.194
	SRR3591712	Green floral bud	0.540
	SRR3591713	Yellow flower	0.498
SRP173429	SRR8316895	Juvenile bud stage	0.657
	SRR8316896	Juvenile bud stage	1.004
	SRR8316897	Juvenile bud stage	0.222
	SRR8316894	Third green stage	0.246
	SRR8316900	Third green stage	0.322
	SRR8316901	Third green stage	0.161
	SRR8316898	Complete white stage	0.330
	SRR8316899	Complete white stage	1.065
	SRR8316903	Complete white stage	0.349
	SRR8316902	Silver flowering stage	0.210
	SRR8316904	Silver flowering stage	0.356
	SRR8316905	Silver flowering stage	0.139
	SRR8316906	Gold flowering stage	0.543
	SRR8316907	Gold flowering stage	0.432
	SRR8316908	Gold flowering stage	0.568
SRP132670	SRR6706286	Control	0.586
	SRR6706287	Light intensity 50%	0.560
	SRR6706288	Light intensity 20%	0.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.871
	CNS0095593	Slightly white alabastrum(diploid) 2	1.194
	CNS0095594	Slightly white alabastrum(diploid) 3	0.512
	CNS0095595	Whole white alabastrum(diploid) 2	0.439
	CNS0095596	Whole white alabastrum(diploid) 3	0.164
	CNS0095597	Whole white alabastrum(diploid) 4	0.161
	CNS0095598	Silvery flower (diploied) 1	2.970
	CNS0095599	Silvery flower (diploied) 2	3.194
	CNS0095600	Silvery flower (diploied) 3	0.756
	CNS0095601	Golden flower (diploid) 1	2.083
	CNS0095602	Golden flower (diploid) 2	0.944
	CNS0095603	Golden flower (diploid) 3	1.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.121
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.620
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.513
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.488
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.340
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.463
	CNS0095610	Silvery flower (tetraploid) 1	0.744
	CNS0095611	Silvery flower (tetraploid) 2	0.875
	CNS0095612	Silvery flower (tetraploid) 3	0.667
	CNS0095613	Golden flower (tetraploid) 1	0.592
	CNS0095614	Golden flower (tetraploid) 2	1.078
	CNS0095615	Golden flower (tetraploid) 3	0.505
CRA001975	CRR073297	Stem 1	0.610
	CRR073298	Stem 2	0.637
	CRR073299	Stem 3	0.144
	CRR073300	Leaf 1	0.271
	CRR073301	Leaf 2	0.582
	CRR073302	Leaf 3	0.221
	CRR073303	Juvenile bud 1	0.342
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.028
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.172
	CRR073309	Second white 1	0.069
	CRR073310	Second white 2	0.034
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.218
	CRR073313	Silver flowering 2	0.027
	CRR073314	Silver flowering 3	0.056
	CRR073315	Gold flowering 1	2.576
	CRR073316	Gold flowering 2	4.858
	CRR073317	Gold flowering 3	5.191
	CRR073318	Tawny withering 1	6.736
	CRR073319	Tawny withering 2	6.779
	CRR073320	Tawny withering 3	1.470