Gene detail

Detail information of GWHGAAZE022933

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009790731.1	0	PREDICTED: ATP-citrate synthase alpha chain protein 2-like [Nicotiana sylvestris]
COG	YP_004151630.1	3E-141	ATP-citrate synthase (ATP-citrate (pro-S-)-lyase)(citrate cleavage enzyme)
Swissprot	tr\|Q9SGY2\|ACLA1_ARATH	0	ATP-citrate synthase alpha chain protein 1
trEMBL	tr\|M1CEI7\|M1CEI7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400065743}
TAIR10	AT1G10670.4	0	ATP-citrate lyase A-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80812728	80817852	+
GWHAAZE00000006	mRNA	80812728	80817852	+
GWHAAZE00000006	exon	80812728	80812826	+
GWHAAZE00000006	exon	80813827	80814003	+
GWHAAZE00000006	exon	80814170	80814331	+
GWHAAZE00000006	exon	80814460	80814540	+
GWHAAZE00000006	exon	80814963	80815014	+
GWHAAZE00000006	exon	80815123	80815237	+
GWHAAZE00000006	exon	80815385	80815466	+
GWHAAZE00000006	exon	80815890	80815985	+
GWHAAZE00000006	exon	80816085	80816186	+
GWHAAZE00000006	exon	80817347	80817463	+
GWHAAZE00000006	exon	80817558	80817674	+
GWHAAZE00000006	exon	80817781	80817852	+
GWHAAZE00000006	CDS	80812728	80812826	+
GWHAAZE00000006	CDS	80813827	80814003	+
GWHAAZE00000006	CDS	80814170	80814331	+
GWHAAZE00000006	CDS	80814460	80814540	+
GWHAAZE00000006	CDS	80814963	80815014	+
GWHAAZE00000006	CDS	80815123	80815237	+
GWHAAZE00000006	CDS	80815385	80815466	+
GWHAAZE00000006	CDS	80815890	80815985	+
GWHAAZE00000006	CDS	80816085	80816186	+
GWHAAZE00000006	CDS	80817347	80817463	+
GWHAAZE00000006	CDS	80817558	80817674	+
GWHAAZE00000006	CDS	80817781	80817852	+

Transcript Sequence
>GWHTAAZE022963 ATGGCACGCAAGAAGATCAGAGAGTACGATTCAAAGAGGTTGCTGAAGGAGCACTATAAGAGACTCTCCGGTGCTGAATTAGCCATTAAATCTGCTCAAGTTACAGAATCAACCGACTTCAATGACTTAGTAGAAAAGGAACCATGGCTCTCCTCAGCAAAACTGGTGGTGAAACCCGATATGTTATTTGGGAAGCGTGGAAAGAGTGGGCTTGTTGCCTTAAATCTTGATCTGGCACAAGTTGCTGAGTTTGTGAAAGAGCGACTTGGCAAAGAGGTAGAGATGGGAGGATGCAAAGGACCCATAACAACTTTCATTGTTGAACCATTCATTCCACATAATGAAGAGTTTTACCTCAATATTGTCTCTGATCGACTTGGTTGTAGCATAAGCTTTTCAGAATGTGGAGGAATTGATATTGAAGAGAACTGGGACAAGGTTAAGACAATATTTATCCCAACTGGGGTGTCTTTGACATCAGAAATATGTGCTCCACTCATAGCTACCCTTCCCTTGGAGATCAAAGCTGTAATTGAGGACTTCATCAAAGTGATCTTTACCCTATTTTCAGATCTGGACTTTACTTTCCTAGAGATGAATCCTTTCACATTGGTCGAAGGGAAGCCTTATCCTCTGGATATGAGAGGAGAACTTGATGATACTGCAGCTTTCAAGAACTTTAAAAAATGGGGTAACATTGAATTTCCATTGCCCTTTGGAAGGATCATGAGTCCTACAGAAAGCTTTATTCATAAGCTAGACGAAAAGACTAGTGCATCTTTGAAGTTCACAGTTCTGAATCCAAAGGGACGAATTTGGACTATGGTTGCTGGTGGAGGTGCCAGTGTCATCTATGCAGATACCGTTGGAGATCTTGGCTATGCTTCTGAGCTTGGAAACTATGCAGAATATAGTGGAGCACCCAATGAAGAGGAGGTCTTGCAGTACGCAAGAGTTGTACTTGATTGTGCAACTGCAGATCCGGATGGCCGTAAAAGAGCCCTTGTAGTAGGAGGTGGCATAGCCAACTTTACTGATGTTGCCGCTACATTCAATGGTATAATTCGTGCATTGAAGGAGAAGGAATCAAAGCTTAAAGCTGCAAGAATGCACATATATGTGAGGAGAGGAGGTCCAAATTATCAAAGGGGACTTGCGAAAATGAGGGCACTTGGAGAAGAAATTGGCATCCCTATTGAGGTTTATGGTCCCGAGGAAACTATGACCGGCATATGCAAACAGGCAATTGAGTGCATCACTGCAGCCGCGTAA

Network for GWHGAAZE022933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08442.11	ATP-grasp_2	6	203	7.50E-17
PF16114.6	Citrate_bind	241	417	9.20E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01648	ACLY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Citrate cycle	map00020
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	146.752
	SRR3591706	second leaf	112.225
	SRR3591707	mature leaf	80.573
	SRR3591708	Shoot apex	87.815
	SRR3591709	Stem	148.538
	SRR3591710	White floral bud	259.078
	SRR3591711	White flower	130.092
	SRR3591712	Green floral bud	158.509
	SRR3591713	Yellow flower	114.560
SRP173429	SRR8316895	Juvenile bud stage	87.827
	SRR8316896	Juvenile bud stage	135.947
	SRR8316897	Juvenile bud stage	53.374
	SRR8316894	Third green stage	62.384
	SRR8316900	Third green stage	223.840
	SRR8316901	Third green stage	207.007
	SRR8316898	Complete white stage	122.303
	SRR8316899	Complete white stage	256.441
	SRR8316903	Complete white stage	166.718
	SRR8316902	Silver flowering stage	50.168
	SRR8316904	Silver flowering stage	83.743
	SRR8316905	Silver flowering stage	41.866
	SRR8316906	Gold flowering stage	124.981
	SRR8316907	Gold flowering stage	103.492
	SRR8316908	Gold flowering stage	135.773
SRP132670	SRR6706286	Control	175.294
	SRR6706287	Light intensity 50%	197.806
	SRR6706288	Light intensity 20%	210.737
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	121.836
	CNS0095593	Slightly white alabastrum(diploid) 2	133.591
	CNS0095594	Slightly white alabastrum(diploid) 3	111.572
	CNS0095595	Whole white alabastrum(diploid) 2	129.119
	CNS0095596	Whole white alabastrum(diploid) 3	137.178
	CNS0095597	Whole white alabastrum(diploid) 4	130.663
	CNS0095598	Silvery flower (diploied) 1	81.127
	CNS0095599	Silvery flower (diploied) 2	87.858
	CNS0095600	Silvery flower (diploied) 3	126.513
	CNS0095601	Golden flower (diploid) 1	84.474
	CNS0095602	Golden flower (diploid) 2	114.764
	CNS0095603	Golden flower (diploid) 3	110.992
	CNS0095604	Slightly white alabastrum(tetraploid) 1	153.203
	CNS0095605	Slightly white alabastrum(tetraploid) 2	125.343
	CNS0095606	Slightly white alabastrum(tetraploid) 3	245.631
	CNS0095607	Whole white alabastrum(tetraploid) 1	88.729
	CNS0095608	Whole white alabastrum(tetraploid) 2	89.241
	CNS0095609	Whole white alabastrum(tetraploid) 3	208.347
	CNS0095610	Silvery flower (tetraploid) 1	157.038
	CNS0095611	Silvery flower (tetraploid) 2	160.917
	CNS0095612	Silvery flower (tetraploid) 3	199.757
	CNS0095613	Golden flower (tetraploid) 1	126.124
	CNS0095614	Golden flower (tetraploid) 2	163.936
	CNS0095615	Golden flower (tetraploid) 3	80.832
CRA001975	CRR073297	Stem 1	135.625
	CRR073298	Stem 2	125.753
	CRR073299	Stem 3	102.073
	CRR073300	Leaf 1	212.822
	CRR073301	Leaf 2	185.656
	CRR073302	Leaf 3	205.683
	CRR073303	Juvenile bud 1	232.792
	CRR073304	Juvenile bud 2	300.180
	CRR073305	Juvenile bud 3	222.222
	CRR073306	Third green 1	173.352
	CRR073307	Third green 2	171.872
	CRR073308	Third green 3	148.993
	CRR073309	Second white 1	95.602
	CRR073310	Second white 2	86.947
	CRR073311	Second white 3	58.370
	CRR073312	Silver flowering 1	63.284
	CRR073313	Silver flowering 2	86.480
	CRR073314	Silver flowering 3	56.511
	CRR073315	Gold flowering 1	67.215
	CRR073316	Gold flowering 2	82.176
	CRR073317	Gold flowering 3	74.634
	CRR073318	Tawny withering 1	171.950
	CRR073319	Tawny withering 2	144.733
	CRR073320	Tawny withering 3	189.342