Detail information of GWHGAAZE022932


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011086593.13.3681E-127PREDICTED: signal recognition particle receptor subunit beta-like [Sesamum indicum]
trEMBLtr|D7TDJ2|D7TDJ2_VITVI8E-122Putative uncharacterized protein {ECO:0000313|EMBL:CBI28565.3}
TAIR10AT5G05670.26E-89signal recognition particle binding

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8080586880808747-
GWHAAZE00000006mRNA8080586880808747-
GWHAAZE00000006exon8080586880806027-
GWHAAZE00000006exon8080639880806529-
GWHAAZE00000006exon8080664880806796-
GWHAAZE00000006exon8080694280807064-
GWHAAZE00000006exon8080777380807855-
GWHAAZE00000006exon8080819480808349-
GWHAAZE00000006exon8080869980808747-
GWHAAZE00000006CDS8080869980808747-
GWHAAZE00000006CDS8080819480808349-
GWHAAZE00000006CDS8080777380807855-
GWHAAZE00000006CDS8080694280807064-
GWHAAZE00000006CDS8080664880806796-
GWHAAZE00000006CDS8080639880806529-
GWHAAZE00000006CDS8080586880806027-
Transcript Sequence

Network for GWHGAAZE022932

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09439.11SRPRB772411.60E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12272SRPRB, SRP102 Protein export map03060

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.127
SRR3591706second leaf1.152
SRR3591707mature leaf1.667
SRR3591708Shoot apex3.457
SRR3591709Stem5.609
SRR3591710White floral bud11.209
SRR3591711White flower7.072
SRR3591712Green floral bud4.733
SRR3591713Yellow flower4.981
SRP173429 SRR8316895Juvenile bud stage 6.181
SRR8316896Juvenile bud stage 12.759
SRR8316897Juvenile bud stage 5.046
SRR8316894Third green stage 5.835
SRR8316900Third green stage 11.244
SRR8316901Third green stage 11.330
SRR8316898Complete white stage 4.247
SRR8316899Complete white stage 9.884
SRR8316903Complete white stage 5.938
SRR8316902Silver flowering stage3.195
SRR8316904Silver flowering stage5.049
SRR8316905Silver flowering stage2.011
SRR8316906Gold flowering stage 5.510
SRR8316907Gold flowering stage 6.016
SRR8316908Gold flowering stage 6.674
SRP132670SRR6706286Control7.660
SRR6706287Light intensity 50%7.122
SRR6706288Light intensity 20%5.933
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.563
CNS0095593Slightly white alabastrum(diploid) 211.551
CNS0095594Slightly white alabastrum(diploid) 318.233
CNS0095595Whole white alabastrum(diploid) 211.999
CNS0095596Whole white alabastrum(diploid) 314.248
CNS0095597Whole white alabastrum(diploid) 410.149
CNS0095598Silvery flower (diploied) 17.096
CNS0095599Silvery flower (diploied) 25.411
CNS0095600Silvery flower (diploied) 37.548
CNS0095601Golden flower (diploid) 17.302
CNS0095602Golden flower (diploid) 25.338
CNS0095603Golden flower (diploid) 35.430
CNS0095604Slightly white alabastrum(tetraploid) 116.287
CNS0095605Slightly white alabastrum(tetraploid) 215.162
CNS0095606Slightly white alabastrum(tetraploid) 37.602
CNS0095607Whole white alabastrum(tetraploid) 110.581
CNS0095608Whole white alabastrum(tetraploid) 28.546
CNS0095609Whole white alabastrum(tetraploid) 38.770
CNS0095610Silvery flower (tetraploid) 110.445
CNS0095611Silvery flower (tetraploid) 28.252
CNS0095612Silvery flower (tetraploid) 312.433
CNS0095613Golden flower (tetraploid) 12.428
CNS0095614Golden flower (tetraploid) 29.857
CNS0095615Golden flower (tetraploid) 32.538
CRA001975CRR073297Stem 17.425
CRR073298Stem 29.903
CRR073299Stem 38.484
CRR073300Leaf 110.204
CRR073301Leaf 210.965
CRR073302Leaf 310.073
CRR073303Juvenile bud 18.797
CRR073304Juvenile bud 213.512
CRR073305Juvenile bud 36.984
CRR073306Third green 14.968
CRR073307Third green 26.865
CRR073308Third green 36.444
CRR073309Second white 13.183
CRR073310Second white 25.753
CRR073311Second white 32.998
CRR073312Silver flowering 11.615
CRR073313Silver flowering 22.942
CRR073314Silver flowering 31.336
CRR073315Gold flowering 11.884
CRR073316Gold flowering 21.146
CRR073317Gold flowering 31.324
CRR073318Tawny withering 17.590
CRR073319Tawny withering 27.747
CRR073320Tawny withering 33.681