Gene detail

Detail information of GWHGAAZE022921

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008221836.1	PREDICTED: phosphatidylinositol 3-kinase, root isoform [Prunus mume]
Swissprot	tr\|P42347\|PI3K1_SOYBN	Phosphatidylinositol 3-kinase, root isoform
trEMBL	tr\|A0A061E791\|A0A061E791_THECC	Phosphatidylinositol 3-kinase {ECO:0000256\|PIRNR:PIRNR000587}
TAIR10	AT1G60490.1	vacuolar protein sorting 34

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80717507	80724272	-
GWHAAZE00000006	mRNA	80717507	80724272	-
GWHAAZE00000006	exon	80724152	80724272	-
GWHAAZE00000006	exon	80723763	80723859	-
GWHAAZE00000006	exon	80723516	80723612	-
GWHAAZE00000006	exon	80722908	80723066	-
GWHAAZE00000006	exon	80722614	80722823	-
GWHAAZE00000006	exon	80722159	80722337	-
GWHAAZE00000006	exon	80721609	80721756	-
GWHAAZE00000006	exon	80720979	80721074	-
GWHAAZE00000006	exon	80720709	80720844	-
GWHAAZE00000006	exon	80720486	80720607	-
GWHAAZE00000006	exon	80720006	80720200	-
GWHAAZE00000006	exon	80719736	80719906	-
GWHAAZE00000006	exon	80719489	80719626	-
GWHAAZE00000006	exon	80719161	80719315	-
GWHAAZE00000006	exon	80718741	80718884	-
GWHAAZE00000006	exon	80718463	80718610	-
GWHAAZE00000006	exon	80718192	80718360	-
GWHAAZE00000006	exon	80717507	80717700	-
GWHAAZE00000006	CDS	80724152	80724272	-
GWHAAZE00000006	CDS	80723763	80723859	-
GWHAAZE00000006	CDS	80723516	80723612	-
GWHAAZE00000006	CDS	80722908	80723066	-
GWHAAZE00000006	CDS	80722614	80722823	-
GWHAAZE00000006	CDS	80722159	80722337	-
GWHAAZE00000006	CDS	80721609	80721756	-
GWHAAZE00000006	CDS	80720979	80721074	-
GWHAAZE00000006	CDS	80720709	80720844	-
GWHAAZE00000006	CDS	80720486	80720607	-
GWHAAZE00000006	CDS	80720006	80720200	-
GWHAAZE00000006	CDS	80719736	80719906	-
GWHAAZE00000006	CDS	80719489	80719626	-
GWHAAZE00000006	CDS	80719161	80719315	-
GWHAAZE00000006	CDS	80718741	80718884	-
GWHAAZE00000006	CDS	80718463	80718610	-
GWHAAZE00000006	CDS	80718223	80718360	-
GWHAAZE00000006	three_prime_UTR	80718192	80718222	-
GWHAAZE00000006	three_prime_UTR	80717507	80717700	-

Transcript Sequence
>GWHTAAZE022951 ATGAGCGGGGGAAACGAATTTCGATTCTTCTTGTCATGCGACATCAATCTTCCTGTTACTTTCCGAATCGAAAAGTTGGAAGGGACCTTGCCAGCCACCTCCTCCAAGCCGCTTAATTCAGATCTCAATTGCACTACAGAGGAGAGAAAACCAGAACTGTATGTAGAGTGTGCATTGTACATTGATGGCGCTCCGTTTGGGCTTCCCATGAGAACAAGGCTAGAATCTGCTGGTCCATCATACTGCTGGAGTGAACTCATTACATTGAGTACAAAATATCGGGACTTAACTGTCAATTCACAACTAGCACTTACTGTTTGGGATGTTTCTTCTGGAAAAAATGAGGGTTTGATTGGTGGGGCTACCGTTCATCTCTTTAACATAAAGAAACAACTCAAAACAGGGAAGCATAAGCTTAGGCTTTGGCAAGGAAAAGAAGCAGATGGATCTATTCAGACAACTACTCCTGGAAAGGTTCCTAAGGAAGAGCGCGGGGAGCTGGAACGTCTGGAAAAGCTTATGAATAAGTATGAAAGAGGGCAGATTCAGCGAGTTGATTGGCTGGACCGCCTCGCTTTCAAGGCTATTGAGAAAGTCAAGGAACGGGAAAGCATTAGAAATGGAAGTTCTCATTTGTACCTGGTTGTTGATTTTTGCAGTTTTGAACATCGGGTTGTTTTCCAGGAGTCAGGAGCAAATTTCTTAATACCGTCTCCTATTGCTTCAACAAATGAACTGGTTACTGTATGGGACCCGGAAGTGGGAAAGATTAATCCATCTGAACACAAGCAACTAAAGCTCGCACGGAGTTTGACACGTGGCATCATTGACAGGGACCTCAAACCAAGCTCTAATGAAAGAAAGTCTATACAGAGAATCTTAAAGTACCCCCCAACCCGTACTTTGAGTGGAGATGAGAGGCAGCTCTTGTGGAAATTTCGCTTTTCATTAATGTCTGAGAAGAGAGCTCTCACGAAGTTTCTCCGATGTGTTGAATGGAGTGATGTTCAGGAAGCAAAGCAGGCAATTGAACTAATGGGTAGGTGGGAAATGATTGATGTTTGTGATGCGTTGGAGCTGCTATCTCCTGTTTTTGAAAGTGAAGAGGTCCGTGCATATGCTGTTAGTGTTCTTGAAAGAGCTGATGATGAAGAGCTCCAGTGTTATCTACTTCAGCTGGTTCAAGCTTTGCGGTTTGAGCGTTCTGACAAATCTCGTCTTTCTCATTTCCTAGTGCAACGTTCATTGTGCAATATTGAGTTGGCTAGCTTTCTCCGGTGGTACGTTGCTGTGGAACTTCATGATCCTTCATATGCAAAACGATTTTATTGTTCCTATGAGATTCTGGAAGAAAATATGATGAAGTTGGGAGTCAGTGCAAATGGAGATGGAGATGGTTTCAAGTTGTGGCAGAGTTTGGTGCGCCAGACAGAACTGACAGCACAATTGTGTTCTATAATGAGAGATGTGAGAAATGTACGTGGTGGAACTCAGAAGAAGATTGAAAAGCTTAGACATCTTCTTTCTGGACTTCTTAGTGAGCTTACCTACTTTGAGGAGCCAATACGATCACCTCTAGCACCAAGTGTCCTCATCACCGGGATCATTCCCTCAGAGTCATCAATATTTAAAAGTGCACTGCACCCCTTGCGCCTGGCTTTTAGAACAGCAAACGGTGGAGTTTGCAAGATCATGTTTAAGAAGGGAGATGATCTTCGGCAAGACCAGTTGGTTGTTCAAATGGTATCCCTTATGGATCGTTTGCTTAAATTGGAGAATCTAGATCTGCATTTAACTCCATACAGAGTCTTGGCAACGGGGCATGATGAAGGCATGCTGGAATTCATTCCATCAAAGTCTTTAGCACAGATTCTAGCAGAGCACCGTAGTATTATTAGCTATCTACAGAAGTTTCACCCCGATGAGGATGGACCATTTGGTATTACAGCTACATGTCTCGAAACATTTATAAAGAGCTGTGCTGGCTACTCGGTTATCACATATATACTGGGCATTGGAGACAGGCACCTTGACAATCTTCTATTGAAGGAGGATGGCCGCCTTTTTCATGTTGATTTTGGTTTTATTTTGGGACGGGACCCCAAGCCCTTCCCACCACCTATGAAGCTTTGCAAAGAAATGGTTGAGGCGATGGGTGGGGCAGAAAGCCAATACTACACCCGGTTTAAATCTTACTGTTGTGAGGCATACAACATCCTCCGAAAATCTAGTAACCTAATACTGAATCTGTTCCATCTGATGGCGGGGTCCAACATTCCTGACATTGCATCTGATCCCGAAAAAGGCATTCTTAAGCTTCAAGAGAAGTTTCGATTGGACTTGGACGACGAGGGGTGTATACAATTTTTCCAGGATCTGATCAATGAGAGTGTTAGTGCATTATTTCCACAAATGGTCGAGACCATTCATCGTTGGGCCCAGTACTGGCGCTGATCAACGACTAAGGAGTTGTATACATGTCTCTTGGAATAGCAATTTTTGAAGAATTGAATCTTTGAGAATTGCTTGCTTGTTGGTCCAGATCGAAGAGGTTTGAAGAAGGAAAAGCGCTCCCGAAACAAGTATCAAACTGTACATAGTAGAAAAGTATTTCTTTTAGTTACCATGTAATATAATTCTATTTTTATAGAAAAATTACTACTCCACACAGAAAGATAT

Network for GWHGAAZE022921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00792.25	PI3K_C2	50	193	1.20E-41
PF00613.21	PI3Ka	279	453	1.10E-63
PF00454.28	PI3_PI4_kinase	563	763	3.90E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00914	PIK3C3, VPS34	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Apelin signaling pathway	map04371
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name
GO:0046854	biological_process	phosphatidylinositol phosphorylation
GO:0048015	biological_process	phosphatidylinositol-mediated signaling
GO:0016301	molecular_function	kinase activity
GO:0016303	molecular_function	1-phosphatidylinositol-3-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.696
	SRR3591706	second leaf	31.346
	SRR3591707	mature leaf	39.143
	SRR3591708	Shoot apex	40.448
	SRR3591709	Stem	54.069
	SRR3591710	White floral bud	51.409
	SRR3591711	White flower	55.067
	SRR3591712	Green floral bud	30.012
	SRR3591713	Yellow flower	48.074
SRP173429	SRR8316895	Juvenile bud stage	24.343
	SRR8316896	Juvenile bud stage	34.611
	SRR8316897	Juvenile bud stage	16.066
	SRR8316894	Third green stage	14.439
	SRR8316900	Third green stage	33.545
	SRR8316901	Third green stage	35.218
	SRR8316898	Complete white stage	22.071
	SRR8316899	Complete white stage	53.464
	SRR8316903	Complete white stage	39.157
	SRR8316902	Silver flowering stage	24.963
	SRR8316904	Silver flowering stage	39.069
	SRR8316905	Silver flowering stage	18.620
	SRR8316906	Gold flowering stage	53.464
	SRR8316907	Gold flowering stage	53.793
	SRR8316908	Gold flowering stage	55.969
SRP132670	SRR6706286	Control	29.420
	SRR6706287	Light intensity 50%	32.453
	SRR6706288	Light intensity 20%	34.028
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.639
	CNS0095593	Slightly white alabastrum(diploid) 2	23.658
	CNS0095594	Slightly white alabastrum(diploid) 3	24.781
	CNS0095595	Whole white alabastrum(diploid) 2	21.486
	CNS0095596	Whole white alabastrum(diploid) 3	17.240
	CNS0095597	Whole white alabastrum(diploid) 4	23.375
	CNS0095598	Silvery flower (diploied) 1	33.528
	CNS0095599	Silvery flower (diploied) 2	29.909
	CNS0095600	Silvery flower (diploied) 3	37.133
	CNS0095601	Golden flower (diploid) 1	31.329
	CNS0095602	Golden flower (diploid) 2	39.645
	CNS0095603	Golden flower (diploid) 3	35.902
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.892
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.078
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.411
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.566
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.444
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.873
	CNS0095610	Silvery flower (tetraploid) 1	53.420
	CNS0095611	Silvery flower (tetraploid) 2	46.752
	CNS0095612	Silvery flower (tetraploid) 3	52.565
	CNS0095613	Golden flower (tetraploid) 1	42.216
	CNS0095614	Golden flower (tetraploid) 2	46.213
	CNS0095615	Golden flower (tetraploid) 3	55.481
CRA001975	CRR073297	Stem 1	34.264
	CRR073298	Stem 2	29.140
	CRR073299	Stem 3	17.756
	CRR073300	Leaf 1	31.914
	CRR073301	Leaf 2	25.880
	CRR073302	Leaf 3	17.782
	CRR073303	Juvenile bud 1	17.493
	CRR073304	Juvenile bud 2	12.084
	CRR073305	Juvenile bud 3	21.869
	CRR073306	Third green 1	8.635
	CRR073307	Third green 2	8.867
	CRR073308	Third green 3	10.457
	CRR073309	Second white 1	9.963
	CRR073310	Second white 2	13.257
	CRR073311	Second white 3	13.056
	CRR073312	Silver flowering 1	10.335
	CRR073313	Silver flowering 2	8.394
	CRR073314	Silver flowering 3	7.856
	CRR073315	Gold flowering 1	12.545
	CRR073316	Gold flowering 2	20.479
	CRR073317	Gold flowering 3	12.662
	CRR073318	Tawny withering 1	17.489
	CRR073319	Tawny withering 2	17.783
	CRR073320	Tawny withering 3	15.178