Gene detail

Detail information of GWHGAAZE022907

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010065082.1	0	PREDICTED: endoglucanase 12 [Eucalyptus grandis]
COG	YP_004404308.1	7E-48	glycoside hydrolase family protein
Swissprot	tr\|Q7XUK4\|GUN12_ORYSJ	0	Endoglucanase 12
trEMBL	tr\|A0A059DC05\|A0A059DC05_EUCGR	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT1G65610.1	1E-176	Six-hairpin glycosidases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80431307	80435063	-
GWHAAZE00000006	mRNA	80431307	80435063	-
GWHAAZE00000006	exon	80431307	80431628	-
GWHAAZE00000006	exon	80431999	80432113	-
GWHAAZE00000006	exon	80432240	80432837	-
GWHAAZE00000006	exon	80433039	80433349	-
GWHAAZE00000006	exon	80434592	80435063	-
GWHAAZE00000006	CDS	80434592	80435063	-
GWHAAZE00000006	CDS	80433039	80433349	-
GWHAAZE00000006	CDS	80432240	80432837	-
GWHAAZE00000006	CDS	80431999	80432113	-
GWHAAZE00000006	CDS	80431307	80431628	-

Transcript Sequence
>GWHTAAZE022937 ATGTATTCGGCAAATCATTGGGGAGGATCGTTGGAGATAACGAACGGAGGAGGAATTAGAGCAAAGGAAGAAGAGGAGGAGGAGGAGGAGAAGAGCAGGAATATTTCGGAGTGGGACAGAGCATCGGTGGGGTTTCATCATCGAGACAACCGCCACGAGCTGGATGAGACGCAGCAGAGTTGGCTCCTGGGACAAGGGTCAAAGGATCACGGGAAGAAGAACAAGTACGTTGACCTAGGGTGTGTGGTTTGCAGCCGGAAGGCACTCCGGTGGACTGTGTGGGGGGTGGCGGCGGTGTTGGTGGTGATCGCACTGCCAATTATAATCACCAAGTCATTGCCCAAGCACAAGCCTCGACCTACTCCGCCGGACAATTATACCATCGCCCTTCACAAGGCGCTCCTCTTCTTCAACGCCCAGAAATGTACGTTTTCCTCCTTTCTCTCACTCGCACTCTCTCTAGCAGCTGTATCCGGGAAGTTGCCCAAGAACAATGGAGGAATTAGTTGGAGGAGAAATTCAGGACTGCAAGATGGATCAACTCTAACAGATGTCAAAGGAGGGCTAGTAGGAGGTTACTACGATGCCGGAGACAATACAAAGTTCCATTTCCCGATGTCATTCGCCATGACTATGCTGAGCTGGAGCGTGATCGAGTACGAGCACAAGTATAAAGATATCGGAGAATATAACCATGTTAGAGAACTCATCAAGTGGGGCACTGATTACTTGCTCCTCACCTTCAACTCATCTTCCACCAAAATTGACAAAATTTATAGCCAGGTTGGTGGGTCTCAAAATGGTTCTACAACACCAGATGACCATACCTGCTGGACAAGACCAGAAGACATGGACTACCCACGCCCAATCCAAACTGCATACTCGGGTCCCGACCTCGCAGGTGAAATGGCAGCTGCAATGGCCGCAGCTTCCATAGTCTTTCGAGACGACAAATCCTACTCCAAAAAGCTTGTCAATGGTGCCACCACAGTCTTCTCCTTTGCCCGTAACTTTGGAAAACGCGCACGTTACAGTCAGGGAAACCCTGAGATCGAGCCTTACTACAACTCCACTGGTTACTTTGACGAGTACATGTGGGGCGCTGCTTGGTTGTTCTACGCCACAGGGAATGATACTTATCTTTCACTGGCAACAAACCCGGGCTTGTCTAAGAACTCGAAGGCATTCTTTATGATCCCAAAGTTGAGTGTGCTTAGTTGGGATAATAAGTTACCGGCGGCTATGTTGCTGTTAACGAGGTTGAGGATATTCTTGAGCCCTGGGTACCCGTACGAGGATATGTTACGGAGCTATCACAATGTTACTAGTCTTACCATGTGTTCCTATCTTCAACAGTACAACATTTACAACTGGACTAAAGGGGGATTAATCCAGCTGAATCATGGTGGTGGGCAGTCTCTGCAATATGTGGCCAACGCTGCTTTCTTGGCATCCCTCTTTGCCGATTATTTGACTGCTATAGGTGTTCCCGGATGGGGGGCCTCAATACCAGAAGACGGCATCAAGTACTCTTGTGAAAGTGGATGGAAATGGTTCCAAACCCGCAGCCCTAACCCTAACACCATTACAGGAGCCATGGTTGGAGGTCCCGTTGGGTCAGATCAGTTCCATGACACACGGTCCAATTACAGCTACACCGAGCCCACCATGGCTGGGAATGCCGGCTTGGTTGCTGCACTAGTGTCCCTCACTATTACAGCCCCAGAAAGTGTTGGTATCGACAAGAATACTATATTCTCGGCAGTTCCACCAATGTACCCATCAAGTCCGCCTCCCCCTGCACCATGGAAGCCTTAA

Network for GWHGAAZE022907

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	126	490	1.10E-76
PF00759.20	Glyco_hydro_9	518	567	3.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.207
	SRR3591706	second leaf	0.069
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.002
	SRR3591709	Stem	0.135
	SRR3591710	White floral bud	0.160
	SRR3591711	White flower	0.010
	SRR3591712	Green floral bud	0.138
	SRR3591713	Yellow flower	0.074
SRP173429	SRR8316895	Juvenile bud stage	0.205
	SRR8316896	Juvenile bud stage	0.340
	SRR8316897	Juvenile bud stage	0.022
	SRR8316894	Third green stage	0.114
	SRR8316900	Third green stage	0.185
	SRR8316901	Third green stage	0.264
	SRR8316898	Complete white stage	0.033
	SRR8316899	Complete white stage	0.347
	SRR8316903	Complete white stage	0.002
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.045
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.106
	SRR8316907	Gold flowering stage	0.443
	SRR8316908	Gold flowering stage	0.067
SRP132670	SRR6706286	Control	0.283
	SRR6706287	Light intensity 50%	0.364
	SRR6706288	Light intensity 20%	0.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.130
	CNS0095593	Slightly white alabastrum(diploid) 2	0.663
	CNS0095594	Slightly white alabastrum(diploid) 3	0.339
	CNS0095595	Whole white alabastrum(diploid) 2	0.162
	CNS0095596	Whole white alabastrum(diploid) 3	0.383
	CNS0095597	Whole white alabastrum(diploid) 4	0.082
	CNS0095598	Silvery flower (diploied) 1	0.292
	CNS0095599	Silvery flower (diploied) 2	0.445
	CNS0095600	Silvery flower (diploied) 3	0.322
	CNS0095601	Golden flower (diploid) 1	0.357
	CNS0095602	Golden flower (diploid) 2	0.298
	CNS0095603	Golden flower (diploid) 3	0.262
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.282
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.222
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.514
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.216
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.367
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.583
	CNS0095610	Silvery flower (tetraploid) 1	0.745
	CNS0095611	Silvery flower (tetraploid) 2	0.769
	CNS0095612	Silvery flower (tetraploid) 3	0.577
	CNS0095613	Golden flower (tetraploid) 1	0.231
	CNS0095614	Golden flower (tetraploid) 2	0.194
	CNS0095615	Golden flower (tetraploid) 3	0.047
CRA001975	CRR073297	Stem 1	0.283
	CRR073298	Stem 2	0.384
	CRR073299	Stem 3	0.304
	CRR073300	Leaf 1	0.244
	CRR073301	Leaf 2	0.202
	CRR073302	Leaf 3	0.162
	CRR073303	Juvenile bud 1	0.106
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.222
	CRR073306	Third green 1	0.645
	CRR073307	Third green 2	0.157
	CRR073308	Third green 3	0.334
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.124
	CRR073311	Second white 3	0.011
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.037
	CRR073314	Silver flowering 3	0.038
	CRR073315	Gold flowering 1	1.169
	CRR073316	Gold flowering 2	1.330
	CRR073317	Gold flowering 3	1.526
	CRR073318	Tawny withering 1	0.309
	CRR073319	Tawny withering 2	0.383
	CRR073320	Tawny withering 3	0.000