Gene detail

Detail information of GWHGAAZE022906

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588207.1	0	PREDICTED: U-box domain-containing protein 18-like [Nicotiana tomentosiformis]
COG	YP_001957951.1	2E-12	hypothetical protein Aasi_0851
Swissprot	tr\|O80742\|PUB19_ARATH	0	U-box domain-containing protein 19
trEMBL	tr\|A0A068TW10\|A0A068TW10_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00177.1}
TAIR10	AT1G60190.1	4E-163	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	80427882	80429933	+
GWHAAZE00000006	mRNA	80427882	80429933	+
GWHAAZE00000006	exon	80427882	80429933	+
GWHAAZE00000006	CDS	80427882	80429933	+

Transcript Sequence
>GWHTAAZE022936 ATGATAAACAAATCCGATGTATTCACTCGCCGGATTCTCACATTTCCGGCAATTCGCCCTTGCGAATCCGTCTCTCCGGTGAGCCTTCTCGCTTCTTTGATCAATCTCGGCCACACAATATGCGAGTACAAGTCGAAATCATTCGTTACGAATAAACGAAAAGCTAGAGAATCGATTCGCCTAGTCGGCAATCTCCTCATTTTCTTCGAAGAAATTCAAAATTCTCGATCCAAACTTTTGGGTGCAACCGTTTTGAGCTTATCGGAGCTCCATTTCGTCTTCCAGAAGATCCAGTTCATGTTAGAAGATTGTGCTCGAGAAGATGCTCGGCTTTGGATGCTAATGAAGTCCGGTCAAGTCAGCGATCAGTTCAAAGTACTCACAAGAGCTATTGGTGTTGCTATCGATGTGATGCCATTAAAGTCTATCGATGTTTCGACTGAAGTTAAGCAATTGGTTGATTTGGTAATGAGGCAAGCGTTGAAGGCGAATCTTAGAGTCGAATCTGATGATAAATGGGCTTCGGATGAAGTTCGTTTGATTTTAAATGAATTCGAGGATAGAATTATTCCGGAACCAAACAAGCTAAGATTGTTTCTTGAATATTTGGGGATTAAAAGATGGAGTGAATGCAGTAGAGAAATCAAGTTTTTTGAAGCCGAAATTGAATTGGCCCATTTGACTGCTGAGAAGCGAGATTTGGAGCTTCTTAGTAGTCTAGTGGCCTTTATGAGCTACTGTCGTTGTGTTGTATTCGATCTTGTTGACAGCGTAAGCAGTCAACAGTCTAATACCAACACTTACAGCAGTGAGGCAATTAAGTGTCTGAATTCAGACGATTTTCGGTGTCCGATCTCTCTTGAGATCATGACTGATCCGGTGATTATATCGACCGGTCACACCTATGACCGACCCTCGATTTTGAAATGGTTCGGTGATGGAAATCATACCTGTCCATTGACTGGTGAGAAGCTAATGTGTACAGATTTAGTTCCCAATTTGGCTTTGAAGAATTGTATTAAGCAATATTGCTTAGAAAATGGGATCATGGTAGCTGAATCGGGTGGGCGAAATCGAGTCACAACAAAGACAATCTTTTCAGGGAGTGTAGCAGCAGAGGAGGCCATGAAAATGCTAGCCAATTTTCTTGTTGGCAAGCTTGTGGCTTTCACAAGCAGAGAGATAAACAAAGCAGCTTTCGAGATTCGCTTGCTCACTAAAACAAGCATTTTTAATAGATCTTGTTTGATTGAAGCCGGTGTGATCCCGAATCTGTTAAACCTACTTTGTTCAAATGATTTGCTCATCCAAGAAAATGCGATCGCATCCCTTTTAAACCTCTCCAAGTATTCGAAAATCAAACGGGTACTAGTTGAAAAGGGAGGTTTGAAAATGGTTCTTGATGTTGTGAAGAACGGGCTAAAGATGGAAGCTCGACAACATGCAGCTGGTACGCTCTTTTATCTTGCTTCCGTAGAGGAATACCGTGTTATGATTGGCGAAATTCCCGAGGCTTTTTCTTCTCTAGTGGAATTGCTCAAAAATGGTGCAGAACGTGGAAAAAAGAACGCGTTGGTTGCAATCTTTGGGCTTATTCAGTGCCCCAAAAATCATTGTAGGGCACTCGCAGCTGGGGTAGTCCCTTTGCTGATTAATCTTTTGGCATCTTCACAAAGGGAAGATCTCATATTAGATTCTCTAGCTGTTTTAGCAACTCTAGCCGAGAAATTAGATGGGGCAATGGCTATTTTGAGCATTGGAGCTTTACATATAATCGTGCGGTCTCTTAGTTCTAATTCGAGGACTGCAAATGAGTATTGTGTTTCGTTGTTGCTTGCTTTGTGCATAAATGGTGGGGCAGATGTGGTTCTGTTTTTAGTAAAGGACCCGTCCCTTATGGGACCTTTGTATTCCCTCCTCACCGAGGGCACCAGTAGAGCAAGTAAAAAGGCCAGTTCACTCATCAGAATGCTGCTTGAATTTAGCGAAAAGAGCTCGTCTGGCTTGAGGAGTCCAGCTGTTAACCAACAACGATTCGTACATGTGTGGTGA

Network for GWHGAAZE022906

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.16	U-box	279	347	1.90E-18
PF00514.24	Arm	412	448	3.10E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.306
	SRR3591706	second leaf	5.863
	SRR3591707	mature leaf	6.519
	SRR3591708	Shoot apex	10.382
	SRR3591709	Stem	23.357
	SRR3591710	White floral bud	13.915
	SRR3591711	White flower	14.942
	SRR3591712	Green floral bud	5.837
	SRR3591713	Yellow flower	6.722
SRP173429	SRR8316895	Juvenile bud stage	8.193
	SRR8316896	Juvenile bud stage	2.842
	SRR8316897	Juvenile bud stage	5.013
	SRR8316894	Third green stage	2.100
	SRR8316900	Third green stage	2.619
	SRR8316901	Third green stage	3.577
	SRR8316898	Complete white stage	1.795
	SRR8316899	Complete white stage	9.372
	SRR8316903	Complete white stage	2.686
	SRR8316902	Silver flowering stage	4.610
	SRR8316904	Silver flowering stage	2.952
	SRR8316905	Silver flowering stage	2.041
	SRR8316906	Gold flowering stage	5.657
	SRR8316907	Gold flowering stage	6.060
	SRR8316908	Gold flowering stage	6.542
SRP132670	SRR6706286	Control	2.488
	SRR6706287	Light intensity 50%	3.215
	SRR6706288	Light intensity 20%	2.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.984
	CNS0095593	Slightly white alabastrum(diploid) 2	2.875
	CNS0095594	Slightly white alabastrum(diploid) 3	3.778
	CNS0095595	Whole white alabastrum(diploid) 2	5.991
	CNS0095596	Whole white alabastrum(diploid) 3	0.824
	CNS0095597	Whole white alabastrum(diploid) 4	3.042
	CNS0095598	Silvery flower (diploied) 1	9.525
	CNS0095599	Silvery flower (diploied) 2	23.091
	CNS0095600	Silvery flower (diploied) 3	14.650
	CNS0095601	Golden flower (diploid) 1	36.405
	CNS0095602	Golden flower (diploid) 2	35.729
	CNS0095603	Golden flower (diploid) 3	30.199
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.742
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.836
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.466
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.250
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.471
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.770
	CNS0095610	Silvery flower (tetraploid) 1	1.767
	CNS0095611	Silvery flower (tetraploid) 2	1.047
	CNS0095612	Silvery flower (tetraploid) 3	5.799
	CNS0095613	Golden flower (tetraploid) 1	2.377
	CNS0095614	Golden flower (tetraploid) 2	1.822
	CNS0095615	Golden flower (tetraploid) 3	6.277
CRA001975	CRR073297	Stem 1	7.947
	CRR073298	Stem 2	11.362
	CRR073299	Stem 3	10.344
	CRR073300	Leaf 1	24.396
	CRR073301	Leaf 2	36.041
	CRR073302	Leaf 3	21.911
	CRR073303	Juvenile bud 1	21.550
	CRR073304	Juvenile bud 2	11.507
	CRR073305	Juvenile bud 3	16.714
	CRR073306	Third green 1	50.398
	CRR073307	Third green 2	41.117
	CRR073308	Third green 3	36.385
	CRR073309	Second white 1	31.291
	CRR073310	Second white 2	32.428
	CRR073311	Second white 3	24.889
	CRR073312	Silver flowering 1	75.499
	CRR073313	Silver flowering 2	164.931
	CRR073314	Silver flowering 3	114.468
	CRR073315	Gold flowering 1	14.925
	CRR073316	Gold flowering 2	25.600
	CRR073317	Gold flowering 3	15.931
	CRR073318	Tawny withering 1	3.701
	CRR073319	Tawny withering 2	13.239
	CRR073320	Tawny withering 3	4.349