Gene detail

Detail information of GWHGAAZE022849

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006483269.1	1.70958E-89	PREDICTED: glutathione S-transferase U17-like [Citrus sinensis]
COG	YP_007090262.1	1E-17	glutathione S-transferase
Swissprot	tr\|Q9FUS8\|GSTUH_ARATH	6E-83	Glutathione S-transferase U17
trEMBL	tr\|V4TJL2\|V4TJL2_9ROSI	4E-89	Uncharacterized protein {ECO:0000313\|EMBL:ESR51790.1}
TAIR10	AT1G10370.1	5E-67	Glutathione S-transferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79631519	79633024	-
GWHAAZE00000006	mRNA	79631519	79633024	-
GWHAAZE00000006	exon	79631519	79631896	-
GWHAAZE00000006	exon	79632704	79633024	-
GWHAAZE00000006	CDS	79632704	79633024	-
GWHAAZE00000006	CDS	79631519	79631896	-

Transcript Sequence
>GWHTAAZE022879 ATGGCAATAAGTGATTTAAAGCTTATAGGCGCATGGCCAAGCCCGTTCGTAAACCGGGTTCAACTCGCCCTAAAATTAAAGTCAATTGACTACGTGTTCATGCAAGAAAATTTTGTTGTTAAGAGTGAACTCCTCCTTAAATTCAATCCTATTCACAAAAAAATTCCGGTTCTTATCCATCACGACAAGCCCATATGTGAGTCGCTTATCATCGTACAATACATCGATGAGGTCTGGAGTAATAATGGTCCCACTCTCCTCCCGTCAGATCCCTATGATCGTGCCATTGCCTGTTTTTGGGCGGCCTATATTGACGATAAGTTGGTTAAGGCAATCGATGTGGCAGTGAAGTCACCGGACGCAAAGAAGAAGAAAGCGGCAATGGAAGAAATCAGTCCAATGTTGGCGGTGTTAGAGGAAGCCTTTGTGAAATGCAGCAAAGGTAAGGCTTTCTTTGGCGGAGACATTATCGGGTACGTGGATATAGCCATGGGGCCATTATGGGGTTGGTTGAAGGTGATTGAGAGTATTAACAAACTTACAGTTCTTGATGAAGCCACCATCCCTAATTTGTTACATTGGGGTGAGAGATTTTATAACGATACTACTGTCAAAGTTGTTATACCCCAACATGAGAAGCTCCTTGACGTTATTATTAAAGCGTTTCCACCCATGTTACTTCATATTCCTTCCAATTAA

Network for GWHGAAZE022849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02798.21	GST_N	5	77	1.60E-14
PF00043.26	GST_C	98	200	6.80E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.325
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.301
	SRR3591710	White floral bud	3.877
	SRR3591711	White flower	0.252
	SRR3591712	Green floral bud	9.895
	SRR3591713	Yellow flower	0.383
SRP173429	SRR8316895	Juvenile bud stage	8.363
	SRR8316896	Juvenile bud stage	18.212
	SRR8316897	Juvenile bud stage	0.318
	SRR8316894	Third green stage	3.311
	SRR8316900	Third green stage	4.138
	SRR8316901	Third green stage	8.509
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.296
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.046
	SRR8316904	Silver flowering stage	0.071
	SRR8316905	Silver flowering stage	0.078
	SRR8316906	Gold flowering stage	0.437
	SRR8316907	Gold flowering stage	0.384
	SRR8316908	Gold flowering stage	1.731
SRP132670	SRR6706286	Control	1.296
	SRR6706287	Light intensity 50%	0.640
	SRR6706288	Light intensity 20%	0.509
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.408
	CNS0095593	Slightly white alabastrum(diploid) 2	5.579
	CNS0095594	Slightly white alabastrum(diploid) 3	19.821
	CNS0095595	Whole white alabastrum(diploid) 2	3.858
	CNS0095596	Whole white alabastrum(diploid) 3	4.786
	CNS0095597	Whole white alabastrum(diploid) 4	3.454
	CNS0095598	Silvery flower (diploied) 1	0.158
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.243
	CNS0095603	Golden flower (diploid) 3	0.122
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.524
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.860
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.311
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.445
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.111
	CNS0095612	Silvery flower (tetraploid) 3	0.333
	CNS0095613	Golden flower (tetraploid) 1	0.230
	CNS0095614	Golden flower (tetraploid) 2	0.082
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.621
	CRR073298	Stem 2	2.808
	CRR073299	Stem 3	2.068
	CRR073300	Leaf 1	0.919
	CRR073301	Leaf 2	0.938
	CRR073302	Leaf 3	0.772
	CRR073303	Juvenile bud 1	0.062
	CRR073304	Juvenile bud 2	0.280
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.136
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.067
	CRR073318	Tawny withering 1	0.441
	CRR073319	Tawny withering 2	0.117
	CRR073320	Tawny withering 3	0.060