Gene detail

Detail information of GWHGAAZE022758

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011075585.1	0	PREDICTED: uncharacterized protein LOC105160026 [Sesamum indicum]
Swissprot	tr\|Q9SHD0\|ZAT4_ARATH	3E-18	Zinc finger protein ZAT4
trEMBL	tr\|A0A068TWS7\|A0A068TWS7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00414.1}
TAIR10	AT1G26610.1	8E-43	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	78137211	78138845	+
GWHAAZE00000006	mRNA	78137211	78138845	+
GWHAAZE00000006	exon	78137211	78138845	+
GWHAAZE00000006	CDS	78137211	78138845	+

Transcript Sequence
>GWHTAAZE022788 ATGGAAATGGAAGTAGATCGAGAATCTAGATTTGTGTGCAAGCTTTGCAACAAAAAGTATCCGTGTGGTAAATCACTAGGTGGTCACATGAGGTCTCATGTAATTGCAAATTCAGCTGAATCAGAGGAGAGATTTGAGCCCACCTTGAAAAAGTTTTCGTCTTTGAATGCTGTGAGGAGTTTGAAGAGAGAGATTGAATTGGGTGGGCCCTCTGGGTATGGCCTTAGAGAGAACCCAAAGAAGACATGGAGGGCTGTGGATTCAAGCTTCCCTTTACCCCAAGAGAAGATTTGTAAGCAATGTGGCAAAGGGTTTCAATCTTTGAAGGCATTGTGTGGCCATATGGCTTGTCACTCTGAGAAAGATAGGGTTTTGAAGGATGATCATTCATGGACCAGTGAGAATGAGATTCAGAAGCTAGTGATGGACAGCCATTCAGATACCGAGGGGGAGGATCCGAGGCGGCTAACGAGATCAAAGAGTAAGATTTACAAGAAGGTGGTTATTAAATCCCCTTCTTTCTCTTATGCTAATAATAATGGGTCTTCCTCTGTTTCTGAAATTGATGAGCAAGAACAACAAGAAGAGGTAGCTATGTGTTTGATGATGTTGTCTAGGGATTCTGGGAATTGGGGTGGTGTTAATTCTGTTGTTGAGTCTTCTGATAATAATTCTGTGGTTTTAGAGACCAAGTCTTCTTCTATTGACATGATAATTAGTACAAAAGAAAGCTTGAATCACTTCGAAAATGGCGATGAGACTCTGAAAATCAAGAAACTTGGCGGTAAGAAGTTGAAATCTGGTGTTTTTGATGGTGAGAGTGTTCAATTTGAGAATTCCTCTTCTGGGTATCTCAGAAATGGATCGAAGAAGGTCGAATCCGACATTTCAGTCGACGAATTCCTCAGAAATGGCGAGTGCAAGAAGCCTAAAGCAAGTAGGGTTGAGGTTTTTGATGCTGATATGGGCAAGGGTTTCAACAGAGAAAAATACTACAAAACTGAATACCGGAGGGATTTTGTTAACGAAAAAGGATATGGTGAAGCTGCCATAGCTGCAGGCTGGACACAGTATGACTCAAAAAAGAGAACCAGAGAGGAGGAACCAAGAAAAAAGACGGTAAAGGGCTCTTCTTTTGATGTTGAAGCAAGCAAGAATGTTCATAAGAGAAGCAAATACGAGTGTTTGAACTGTAACAAGACTTTCAACTCTCACCAAGCTCTTGGGGGACACAGGCCTTGCCATAAAAGGATCAATGCCTATTCGCCCTCGAGCTATGAAAGTGGCGAAAACAGCGTAGATGGTGATAGTGCTCACATTCACGTACCAAATGATAAGCTTAAGGAATCTCTAAGTTACAAGAAACCAAAAGCTAAGGATTTGACTTCCAATGCTGAGAAAAAATATAGGCTGAAGAAAATCAAGGGCCACGAATGCCCTATCTGCTTCAAGATTTTCAAGTCAGGGCAAGCATTAGGCGGTCACAAGCGTTCCCATTTTATTGGAGGTTCCGAGGATAGGAATAATTTCACTCCTGTTACCAAACAAGATATTGCTGAGGTTCATGATTTAATTGACCTTAATCTCCCGGCTCCAGTAGAAGACGAGGATGATGAGCTTGGTCAATTCGTTTGA

Network for GWHGAAZE022758

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	10	33	3.90E-06
PF13912.7	zf-C2H2_6	97	120	9.40E-07
PF13912.7	zf-C2H2_6	393	417	1.50E-06
PF13912.7	zf-C2H2_6	477	499	3.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.717
	SRR3591706	second leaf	0.974
	SRR3591707	mature leaf	0.413
	SRR3591708	Shoot apex	1.453
	SRR3591709	Stem	5.555
	SRR3591710	White floral bud	1.317
	SRR3591711	White flower	0.580
	SRR3591712	Green floral bud	3.563
	SRR3591713	Yellow flower	0.378
SRP173429	SRR8316895	Juvenile bud stage	2.560
	SRR8316896	Juvenile bud stage	8.135
	SRR8316897	Juvenile bud stage	2.591
	SRR8316894	Third green stage	2.256
	SRR8316900	Third green stage	3.760
	SRR8316901	Third green stage	4.272
	SRR8316898	Complete white stage	0.416
	SRR8316899	Complete white stage	1.764
	SRR8316903	Complete white stage	0.524
	SRR8316902	Silver flowering stage	0.218
	SRR8316904	Silver flowering stage	0.293
	SRR8316905	Silver flowering stage	0.119
	SRR8316906	Gold flowering stage	0.040
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.585
SRP132670	SRR6706286	Control	1.163
	SRR6706287	Light intensity 50%	1.385
	SRR6706288	Light intensity 20%	1.811
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.264
	CNS0095593	Slightly white alabastrum(diploid) 2	5.044
	CNS0095594	Slightly white alabastrum(diploid) 3	8.208
	CNS0095595	Whole white alabastrum(diploid) 2	2.874
	CNS0095596	Whole white alabastrum(diploid) 3	4.030
	CNS0095597	Whole white alabastrum(diploid) 4	2.257
	CNS0095598	Silvery flower (diploied) 1	0.865
	CNS0095599	Silvery flower (diploied) 2	0.265
	CNS0095600	Silvery flower (diploied) 3	0.332
	CNS0095601	Golden flower (diploid) 1	0.510
	CNS0095602	Golden flower (diploid) 2	0.108
	CNS0095603	Golden flower (diploid) 3	0.219
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.895
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.566
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.375
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.152
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.425
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.468
	CNS0095610	Silvery flower (tetraploid) 1	0.336
	CNS0095611	Silvery flower (tetraploid) 2	0.170
	CNS0095612	Silvery flower (tetraploid) 3	0.333
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.286
	CNS0095615	Golden flower (tetraploid) 3	0.074
CRA001975	CRR073297	Stem 1	3.401
	CRR073298	Stem 2	4.804
	CRR073299	Stem 3	3.462
	CRR073300	Leaf 1	2.826
	CRR073301	Leaf 2	3.414
	CRR073302	Leaf 3	3.172
	CRR073303	Juvenile bud 1	2.621
	CRR073304	Juvenile bud 2	0.990
	CRR073305	Juvenile bud 3	1.283
	CRR073306	Third green 1	1.094
	CRR073307	Third green 2	0.430
	CRR073308	Third green 3	0.746
	CRR073309	Second white 1	0.029
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.323
	CRR073316	Gold flowering 2	0.049
	CRR073317	Gold flowering 3	0.154
	CRR073318	Tawny withering 1	5.851
	CRR073319	Tawny withering 2	2.549
	CRR073320	Tawny withering 3	5.287