Gene detail

Detail information of GWHGAAZE022659

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004135105.1	PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]
Swissprot	tr\|Q38950\|2AAB_ARATH	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
trEMBL	tr\|A0A067KAU6\|A0A067KAU6_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP29385.1}
TAIR10	AT3G25800.1	protein phosphatase 2A subunit A2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76322777	76329251	+
GWHAAZE00000006	mRNA	76322777	76329251	+
GWHAAZE00000006	exon	76322777	76323001	+
GWHAAZE00000006	exon	76324050	76324296	+
GWHAAZE00000006	exon	76325456	76325589	+
GWHAAZE00000006	exon	76326048	76326127	+
GWHAAZE00000006	exon	76326324	76326465	+
GWHAAZE00000006	exon	76326570	76326697	+
GWHAAZE00000006	exon	76327156	76327258	+
GWHAAZE00000006	exon	76327469	76327663	+
GWHAAZE00000006	exon	76327899	76327991	+
GWHAAZE00000006	exon	76328732	76328871	+
GWHAAZE00000006	exon	76328967	76329033	+
GWHAAZE00000006	exon	76329132	76329251	+
GWHAAZE00000006	CDS	76322777	76323001	+
GWHAAZE00000006	CDS	76324050	76324296	+
GWHAAZE00000006	CDS	76325456	76325589	+
GWHAAZE00000006	CDS	76326048	76326127	+
GWHAAZE00000006	CDS	76326324	76326465	+
GWHAAZE00000006	CDS	76326570	76326697	+
GWHAAZE00000006	CDS	76327156	76327258	+
GWHAAZE00000006	CDS	76327469	76327663	+
GWHAAZE00000006	CDS	76327899	76327991	+
GWHAAZE00000006	CDS	76328732	76328871	+
GWHAAZE00000006	CDS	76328967	76329033	+
GWHAAZE00000006	CDS	76329132	76329251	+

Transcript Sequence
>GWHTAAZE022689 ATGATGATGACGATGGCGAGGTGCTTCTTGCAATGGCGGAAGAATTGGGCTTTTGTTCCTTACATAGGTGGAATGGAGCATGCACATGTTTTGCTTCCCCCTTTGGAAACCCTTTGCACTGTTGAGGAAACCTGTGTCAGGGACAAAGCTGTGGAATCGCTATGTAGAATCGGTTCTCAGATGAGGGAGAGTGATTTAGTTGATTCATTCATACCTTTGGTGAAGAGGCTGGCAGCTGGTGAATGGTTTACAGCTAGAGTGTCCTCTTGTGGACTATTTCACATTGCTTATCCCAGTGCTACGGAGACATTGAAGACAGAATTGCGGTCGATATACAATCAGTTGTGTCAAGATGACATGCCTATGGTGAGGAGGTCTGTGGCTACGAACTTGGGGAAGTTTGCTGCTACCATCGAACCTGCTCATCTTAAGACTGACATCATGTCAATATTTGAGGATCTTACACAGGATGACCAAGATTCTGTTCGATTATTAGCTGTTGAGGGCTGTGCTGCTCTTGGGAAGTTACTAGAGCCCCAAGATTGTGTTGCAAATATTCTCCCCGTTATTGTCAACTTCTCTCAGGTCCACTTGCTTTGCTGTTTTGACAAGTCATGGCGTGTTCGCTACATGGTTGCAAATCAGTTATATGAGCTTTGTGAAGCTGTGGGGCCTGAACCTACCAAGTCGGATTTGGTTCCTGCATATGTGAGGCTACTAAGAGATAATGAAGCTGAAGTACGTATAGCTGCTGCTGGCAAAGTCACGAAGTTCAGCCGGATTCTTAATCCTGAACTTGCAATTCAGCACATTCTTCCGTGTGTAAAGGAATTGTCATCAGATTCTTCTCAGCACGTTAGGTCTGCTCTGGCCTCTGTTATAATGGGCATGGCTCCTGTTTTAGGAAAGGTGATAATATCTATCAATCATCTCTCCTTAATCTCCAGTTTGGGGAGGATGCAACTATTGAACAGCTTCTTCCAATATTCCTCTCTGCTAAAGGATGAATTTCCTGATGTACGCCTTAATATTATTAGCAAGCTCGATCAAGTAAATCAGACAACGTTGCAGGTTATTGGGATTGATCTTTTGTCCCAATCTCTACTGCCGGCTATTGTGGAGCTTGCAGAGGATAGGCATTGGAGGGTTCGACTGGCAATAATAGAGTATATACCTCTATTGGCAAGTCAGTTAGGTGTAGGCTTTTTCGACGATAAGCTTGGCGCTCTCTGCATGCAGTGGTTACAGGATAAGGTTTACTCGATTCGAGATGCTGCTGCTAATAACCTGAAACGCCTTGCAGAAGAATTTGGTCCAGAGTGGGCAATGCAGCACATCGTTCCACAGGTCTTGGATATGATCAACAACCAGCACTACTTGTATCGGATGACAATCCTCCGTGCAGTTTCCCTTCTTGCCCCTGTCATAGGCCCAGAAATCACTTGTTCTAAACTGCTGCCCGTGGTCGTTACTCTATCAAAGGACAGAGTGCCGAACATCAAGTTTAACGTGGCGAAGGTGTTACAATCCCTTATTCCAATTGTTGATCAGTCTGTGGTGGAGAAGACAATTCGACCGTCTCTGGTTGAGCTAGCAGAGGACCCAGATGTTGATGTCCGTTTTTTTGCAAACGAAGCACTTCAGGCAATCGATCACGTCATGATGTCAAGCTGA

Network for GWHGAAZE022659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13646.7	HEAT_2	332	431	5.40E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03456	PPP2R1	mRNA surveillance pathway	map03015
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.947
	SRR3591706	second leaf	34.291
	SRR3591707	mature leaf	29.559
	SRR3591708	Shoot apex	52.282
	SRR3591709	Stem	52.332
	SRR3591710	White floral bud	56.729
	SRR3591711	White flower	61.596
	SRR3591712	Green floral bud	63.259
	SRR3591713	Yellow flower	64.983
SRP173429	SRR8316895	Juvenile bud stage	19.846
	SRR8316896	Juvenile bud stage	31.823
	SRR8316897	Juvenile bud stage	4.942
	SRR8316894	Third green stage	13.291
	SRR8316900	Third green stage	44.154
	SRR8316901	Third green stage	44.335
	SRR8316898	Complete white stage	14.459
	SRR8316899	Complete white stage	34.213
	SRR8316903	Complete white stage	21.737
	SRR8316902	Silver flowering stage	14.813
	SRR8316904	Silver flowering stage	18.777
	SRR8316905	Silver flowering stage	10.276
	SRR8316906	Gold flowering stage	34.979
	SRR8316907	Gold flowering stage	35.311
	SRR8316908	Gold flowering stage	20.172
SRP132670	SRR6706286	Control	39.094
	SRR6706287	Light intensity 50%	39.220
	SRR6706288	Light intensity 20%	46.896
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.566
	CNS0095593	Slightly white alabastrum(diploid) 2	27.400
	CNS0095594	Slightly white alabastrum(diploid) 3	22.481
	CNS0095595	Whole white alabastrum(diploid) 2	27.857
	CNS0095596	Whole white alabastrum(diploid) 3	29.047
	CNS0095597	Whole white alabastrum(diploid) 4	27.348
	CNS0095598	Silvery flower (diploied) 1	18.698
	CNS0095599	Silvery flower (diploied) 2	18.772
	CNS0095600	Silvery flower (diploied) 3	30.254
	CNS0095601	Golden flower (diploid) 1	17.065
	CNS0095602	Golden flower (diploid) 2	27.397
	CNS0095603	Golden flower (diploid) 3	27.826
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.765
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.029
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.108
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.227
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.194
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.068
	CNS0095610	Silvery flower (tetraploid) 1	9.863
	CNS0095611	Silvery flower (tetraploid) 2	6.577
	CNS0095612	Silvery flower (tetraploid) 3	13.469
	CNS0095613	Golden flower (tetraploid) 1	8.925
	CNS0095614	Golden flower (tetraploid) 2	10.690
	CNS0095615	Golden flower (tetraploid) 3	10.107
CRA001975	CRR073297	Stem 1	42.843
	CRR073298	Stem 2	42.050
	CRR073299	Stem 3	42.226
	CRR073300	Leaf 1	49.431
	CRR073301	Leaf 2	45.871
	CRR073302	Leaf 3	47.056
	CRR073303	Juvenile bud 1	49.826
	CRR073304	Juvenile bud 2	39.832
	CRR073305	Juvenile bud 3	55.625
	CRR073306	Third green 1	34.348
	CRR073307	Third green 2	24.069
	CRR073308	Third green 3	29.648
	CRR073309	Second white 1	42.512
	CRR073310	Second white 2	37.099
	CRR073311	Second white 3	39.292
	CRR073312	Silver flowering 1	46.105
	CRR073313	Silver flowering 2	51.205
	CRR073314	Silver flowering 3	41.575
	CRR073315	Gold flowering 1	21.207
	CRR073316	Gold flowering 2	23.046
	CRR073317	Gold flowering 3	21.214
	CRR073318	Tawny withering 1	47.127
	CRR073319	Tawny withering 2	30.419
	CRR073320	Tawny withering 3	47.368