Gene detail

Detail information of GWHGAAZE022651

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004135105.1	0	PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]
COG	YP_008090636.1	0.00000009	FOG: HEAT repeat
Swissprot	tr\|Q38950\|2AAB_ARATH	0	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
trEMBL	tr\|A0A0A0KT59\|A0A0A0KT59_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN52064.1}
TAIR10	AT3G25800.1	0	protein phosphatase 2A subunit A2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	76173563	76180319	+
GWHAAZE00000006	mRNA	76173563	76180319	+
GWHAAZE00000006	exon	76173563	76173955	+
GWHAAZE00000006	exon	76174505	76174751	+
GWHAAZE00000006	exon	76175917	76176029	+
GWHAAZE00000006	exon	76177111	76177190	+
GWHAAZE00000006	exon	76177387	76177528	+
GWHAAZE00000006	exon	76177632	76177712	+
GWHAAZE00000006	exon	76178219	76178323	+
GWHAAZE00000006	exon	76178546	76178728	+
GWHAAZE00000006	exon	76178965	76179057	+
GWHAAZE00000006	exon	76179800	76179939	+
GWHAAZE00000006	exon	76180035	76180101	+
GWHAAZE00000006	exon	76180200	76180319	+
GWHAAZE00000006	CDS	76173563	76173955	+
GWHAAZE00000006	CDS	76174505	76174751	+
GWHAAZE00000006	CDS	76175917	76176029	+
GWHAAZE00000006	CDS	76177111	76177190	+
GWHAAZE00000006	CDS	76177387	76177528	+
GWHAAZE00000006	CDS	76177632	76177712	+
GWHAAZE00000006	CDS	76178219	76178323	+
GWHAAZE00000006	CDS	76178546	76178728	+
GWHAAZE00000006	CDS	76178965	76179057	+
GWHAAZE00000006	CDS	76179800	76179939	+
GWHAAZE00000006	CDS	76180035	76180101	+
GWHAAZE00000006	CDS	76180200	76180319	+

Transcript Sequence
>GWHTAAZE022681 ATGTCGATGGTTGACGAGCCACTGTACCCTATAGCCGTTCTGATAGATGAGCTGAAGAATGATGACATTCAATTGAGGCTAAATTCTATTCGGAGGTTGTCAACAATTGCTCGTGCTCTTGGGGAGGAGCGAACACGAAAGGAGTTAATTCCCTTTTTGAGTGAAAACAATGATGATGACGATGAGGTGCTTCTTGCAATGGCGGAAGAATTGGGCGTTTTTGTTCCTTACATAGGTGGAGTGGAGCATGCACATGTTTTGCTTCCCCCTTTGGAAACCCTTTGCACTGTTGAGGAAACCTGTGTCAGGGACAAAGCTGTGGAATCGCTATGTAGAATCGGTTCTCAGATGAGGGAGAGTGATTTAGTTGATTCATTCATACCTTTGGTGAAGAGGCTGGCAGCTGGTGAATGGTTTACAGCTAGAGTGTCCTCTTGTGGACTATTTCACATTGCTTATCCCAGTGCTACGGAGACGTTGAAGACAGAATTGCGGTCGATATACAATCAGTTGTGTCAAGATGACATGCCTATGGTGAGGAGGTCTGTGGCTACGAACTTGGGGAAGTTTGCTGCTACCATCGAACCTGCTCATCTTAAGACTGACATCATGTCAATATTTGAGGATCTTACACAGGATGACCAAGATTCTGTTCGATTACTAGCTGTTGAGGGCTGTGCTGCTCTTGGGAAGTTACTAGAGCCCCAAGATTGTGTTGCAAATATTCTCCCCGTTATTGTCAACTTCTCTCAGGACAAGTCATGGCGTGTTCGCTACATGGTTGCAAATCAGTTATATGAGCTTTGTGAAGCTGTGGGGCCTGAACCTACCAAGTCAGATTTGGTTCCTGCATATGTGAGGCTACTAAGAGATAATGAAGCTGAAGTACGTATAGCTGCTGCTGGCAAAGTTACGAAGTTCAGCCGGATTCTTAATCCTGAACTTGCAATTCAGCACATTCTTCCGTGTGTAAAGGAATTGTCATCAGATTCTTCTCAGCACGTTAGGTCTGCTCTGGCCTCTGTTATAATGGGCATGGCTCCTGTTTTAGGAAAGGATGCAACTATTGAACAGCTTCTTCCAATATTCCTCTCTCTGCTAAAGGATGAATTTCCTGATGTACGCCTTAATATTATTAGCAAGCTCGATCAAGTAAATCAGGTTATTGGGATTGATCTTTTGTCCCAATCTCTACTGCCGGCTATTGTGGAGCTTGCAGAGGATAGGCATTGGAGGGTTCGACTGGCAATAATAGAGTATATACCTCTATTGGCAAGTCAGTTAGGTGTAGGCTTTTTTGACGATAAGCTTGGCGCTCTCTGCATGCAGTGGTTACAGGATAAGGTTTACTCGATTCGAGATGCTGCTGCTAATAACCTGAAACGCCTTGCAGAAGAATTTGGTCCAGAGTGGGCAATGCAGCACATCGTTCCACAGGTCTTGGATATGATCAACAACCAGCACTACTTGTATCGGATGACAATCCTCCGTGCAGTTTCCCTTCTTGCCCCTGTCATAGGCCCAGAAATCACTTGTTCTAAACTGCTGCCCGTGGTCGTTACTCTATCAAAGGACAGAGTGCCGAACATCAAGTTTAACGTGGCGAAGGTGTTACAATCCCTTATTCCAATTGTTGATCAGTCTGTGGTGGAGAAGACAATTCGACCGTCTCTGGTTGAGCTAGCAGAGGACCCAGATGTTGATGTCCGTTTTTTTGCAAACGAAGCACTTCAGGCAATCGATCACGTCATGATGTCAAGCTGA

Network for GWHGAAZE022651

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02985.23	HEAT	242	270	0.00016
PF13646.7	HEAT_2	361	461	4.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03456	PPP2R1	mRNA surveillance pathway	map03015
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.651
	SRR3591706	second leaf	25.100
	SRR3591707	mature leaf	19.754
	SRR3591708	Shoot apex	36.820
	SRR3591709	Stem	31.037
	SRR3591710	White floral bud	41.059
	SRR3591711	White flower	44.970
	SRR3591712	Green floral bud	47.046
	SRR3591713	Yellow flower	41.382
SRP173429	SRR8316895	Juvenile bud stage	27.921
	SRR8316896	Juvenile bud stage	45.235
	SRR8316897	Juvenile bud stage	31.384
	SRR8316894	Third green stage	19.452
	SRR8316900	Third green stage	59.914
	SRR8316901	Third green stage	53.806
	SRR8316898	Complete white stage	21.387
	SRR8316899	Complete white stage	47.688
	SRR8316903	Complete white stage	31.271
	SRR8316902	Silver flowering stage	19.705
	SRR8316904	Silver flowering stage	25.881
	SRR8316905	Silver flowering stage	14.979
	SRR8316906	Gold flowering stage	51.947
	SRR8316907	Gold flowering stage	46.822
	SRR8316908	Gold flowering stage	66.127
SRP132670	SRR6706286	Control	47.799
	SRR6706287	Light intensity 50%	52.200
	SRR6706288	Light intensity 20%	55.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.422
	CNS0095593	Slightly white alabastrum(diploid) 2	34.048
	CNS0095594	Slightly white alabastrum(diploid) 3	28.566
	CNS0095595	Whole white alabastrum(diploid) 2	36.326
	CNS0095596	Whole white alabastrum(diploid) 3	39.998
	CNS0095597	Whole white alabastrum(diploid) 4	35.102
	CNS0095598	Silvery flower (diploied) 1	26.554
	CNS0095599	Silvery flower (diploied) 2	28.124
	CNS0095600	Silvery flower (diploied) 3	42.368
	CNS0095601	Golden flower (diploid) 1	24.545
	CNS0095602	Golden flower (diploid) 2	41.580
	CNS0095603	Golden flower (diploid) 3	38.616
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.217
	CNS0095605	Slightly white alabastrum(tetraploid) 2	65.525
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.270
	CNS0095607	Whole white alabastrum(tetraploid) 1	63.721
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.696
	CNS0095609	Whole white alabastrum(tetraploid) 3	91.834
	CNS0095610	Silvery flower (tetraploid) 1	57.664
	CNS0095611	Silvery flower (tetraploid) 2	61.459
	CNS0095612	Silvery flower (tetraploid) 3	60.496
	CNS0095613	Golden flower (tetraploid) 1	37.873
	CNS0095614	Golden flower (tetraploid) 2	57.879
	CNS0095615	Golden flower (tetraploid) 3	64.368
CRA001975	CRR073297	Stem 1	55.975
	CRR073298	Stem 2	49.394
	CRR073299	Stem 3	56.804
	CRR073300	Leaf 1	57.242
	CRR073301	Leaf 2	54.096
	CRR073302	Leaf 3	55.484
	CRR073303	Juvenile bud 1	63.279
	CRR073304	Juvenile bud 2	45.706
	CRR073305	Juvenile bud 3	60.664
	CRR073306	Third green 1	36.144
	CRR073307	Third green 2	31.286
	CRR073308	Third green 3	32.897
	CRR073309	Second white 1	40.729
	CRR073310	Second white 2	42.320
	CRR073311	Second white 3	42.695
	CRR073312	Silver flowering 1	55.781
	CRR073313	Silver flowering 2	60.124
	CRR073314	Silver flowering 3	54.324
	CRR073315	Gold flowering 1	23.526
	CRR073316	Gold flowering 2	28.830
	CRR073317	Gold flowering 3	26.615
	CRR073318	Tawny withering 1	56.756
	CRR073319	Tawny withering 2	39.476
	CRR073320	Tawny withering 3	55.824