Gene detail

Detail information of GWHGAAZE022619

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00646.1	5.5438E-109	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q39265\|ZFP6_ARATH	5E-34	Zinc finger protein 6
trEMBL	tr\|A0A068TWM2\|A0A068TWM2_COFCA	2E-109	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00646.1}
TAIR10	AT1G68360.1	5E-43	C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	75499956	75500624	+
GWHAAZE00000006	mRNA	75499956	75500624	+
GWHAAZE00000006	exon	75499956	75500624	+
GWHAAZE00000006	CDS	75499956	75500624	+

Transcript Sequence
>GWHTAAZE022649 ATGGAAGAACTTCATTTTCAAAGTAAGGCAAACAACACCACAACCACTAATGGAGGCTTAAAGCTCTTTGGCTTCAACGTATCTGAGGACGAAGAGGTAGACTCATCAACCAAGACACCCTCCGGTTCATCGGACTCCGGCGGATTTCCTGCAAACGACGGCCGGAAATACGAGTGCCAGTACTGTTGCCGGGAATTTGCCAACTCACAAGCCTTAGGTGGCCACCAAAACGCCCACAAAAAGGAGAGGCAACAATTAAAACGTGCCCAAATGCAAGCCAGCCGAAACGCCGCCGTTTCCTACATGCGCAACCCCATAATCTCCGCCTTCGCTCCGCCCCCTCACCTTCTAGGCCAGGTGGCGCTCCCTCCGGCTACGACGACGGGATCTCCTTCGTGGGTGTACGTTCCACGGCCCTTGCCGCCATTCCACGTGTCGCACGGGTGTGTGTTCCCGCCATCATCATCGTCGGGAGGGAGGGGTGCAGGGACGTTAACGTATACGGGTGGTGTCGGGGATTCAGCATTGTCGAATAGTGGGCCTCAGATACAGAGCCGGGTCCATCACGGGAGAGTAGACGATGGGCCATCATTGAGGAGGTTCTCGAGAGGGGATGGTGGACCCACTTTTGATGATGCGTTCGGCTTGGATTTGCAGCTTAGTTTGTAG

Network for GWHGAAZE022619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.821
	SRR3591706	second leaf	1.066
	SRR3591707	mature leaf	0.458
	SRR3591708	Shoot apex	10.957
	SRR3591709	Stem	13.863
	SRR3591710	White floral bud	0.510
	SRR3591711	White flower	0.872
	SRR3591712	Green floral bud	1.067
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.144
	SRR8316896	Juvenile bud stage	0.221
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.459
	SRR8316900	Third green stage	0.072
	SRR8316901	Third green stage	0.311
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.135
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.360
	SRR6706287	Light intensity 50%	0.279
	SRR6706288	Light intensity 20%	0.071
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.766
	CNS0095593	Slightly white alabastrum(diploid) 2	0.461
	CNS0095594	Slightly white alabastrum(diploid) 3	1.234
	CNS0095595	Whole white alabastrum(diploid) 2	0.468
	CNS0095596	Whole white alabastrum(diploid) 3	0.175
	CNS0095597	Whole white alabastrum(diploid) 4	0.397
	CNS0095598	Silvery flower (diploied) 1	0.207
	CNS0095599	Silvery flower (diploied) 2	0.364
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.486
	CNS0095602	Golden flower (diploid) 2	0.198
	CNS0095603	Golden flower (diploid) 3	0.071
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.496
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.807
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.752
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.297
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.045
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.048
	CNS0095610	Silvery flower (tetraploid) 1	0.145
	CNS0095611	Silvery flower (tetraploid) 2	0.193
	CNS0095612	Silvery flower (tetraploid) 3	0.153
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.598
	CRR073298	Stem 2	2.147
	CRR073299	Stem 3	5.147
	CRR073300	Leaf 1	0.124
	CRR073301	Leaf 2	0.797
	CRR073302	Leaf 3	0.251
	CRR073303	Juvenile bud 1	0.298
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.384
	CRR073306	Third green 1	0.906
	CRR073307	Third green 2	1.536
	CRR073308	Third green 3	0.449
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.085
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.132
	CRR073316	Gold flowering 2	0.088
	CRR073317	Gold flowering 3	0.260
	CRR073318	Tawny withering 1	25.593
	CRR073319	Tawny withering 2	11.227
	CRR073320	Tawny withering 3	28.518