Detail information of GWHGAAZE022594


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011070732.11.6881E-155PREDICTED: sec-independent protein translocase protein TATC, chloroplastic-like [Sesamum indicum]
COGYP_007129726.14E-107Sec-independent protein translocase TatC
Swissprottr|Q9SJV5|TATC_ARATH2E-142Sec-independent protein translocase protein TATC, chloroplastic (Precursor)
trEMBLtr|A0A061E5P5|A0A061E5P5_THECC4E-152Sec-independent periplasmic protein translocase {ECO:0000313|EMBL:EOX99957.1}
TAIR10AT2G01110.11E-101Sec-independent periplasmic protein translocase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7505643175059897-
GWHAAZE00000006mRNA7505643175059897-
GWHAAZE00000006exon7505958575059897-
GWHAAZE00000006exon7505784375058159-
GWHAAZE00000006exon7505742775057717-
GWHAAZE00000006exon7505643175057081-
GWHAAZE00000006CDS7505958575059897-
GWHAAZE00000006CDS7505784375058159-
GWHAAZE00000006CDS7505742775057717-
GWHAAZE00000006CDS7505687275057081-
GWHAAZE00000006three_prime_UTR7505643175056871-
Transcript Sequence

Network for GWHGAAZE022594

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00902.19TatC1513593.20E-61
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03118tatC Protein export map03060
Bacterial secretion systemmap03070

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.205
SRR3591706second leaf9.173
SRR3591707mature leaf6.015
SRR3591708Shoot apex11.223
SRR3591709Stem8.807
SRR3591710White floral bud2.837
SRR3591711White flower2.221
SRR3591712Green floral bud4.678
SRR3591713Yellow flower1.037
SRP173429 SRR8316895Juvenile bud stage 7.163
SRR8316896Juvenile bud stage 8.270
SRR8316897Juvenile bud stage 3.814
SRR8316894Third green stage 4.927
SRR8316900Third green stage 15.191
SRR8316901Third green stage 11.048
SRR8316898Complete white stage 4.977
SRR8316899Complete white stage 19.317
SRR8316903Complete white stage 7.645
SRR8316902Silver flowering stage2.947
SRR8316904Silver flowering stage4.353
SRR8316905Silver flowering stage1.838
SRR8316906Gold flowering stage 6.004
SRR8316907Gold flowering stage 5.436
SRR8316908Gold flowering stage 5.014
SRP132670SRR6706286Control13.220
SRR6706287Light intensity 50%12.486
SRR6706288Light intensity 20%15.095
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.949
CNS0095593Slightly white alabastrum(diploid) 29.942
CNS0095594Slightly white alabastrum(diploid) 35.659
CNS0095595Whole white alabastrum(diploid) 28.873
CNS0095596Whole white alabastrum(diploid) 38.611
CNS0095597Whole white alabastrum(diploid) 46.351
CNS0095598Silvery flower (diploied) 18.717
CNS0095599Silvery flower (diploied) 29.041
CNS0095600Silvery flower (diploied) 39.229
CNS0095601Golden flower (diploid) 17.179
CNS0095602Golden flower (diploid) 28.892
CNS0095603Golden flower (diploid) 39.339
CNS0095604Slightly white alabastrum(tetraploid) 110.922
CNS0095605Slightly white alabastrum(tetraploid) 29.285
CNS0095606Slightly white alabastrum(tetraploid) 317.057
CNS0095607Whole white alabastrum(tetraploid) 17.224
CNS0095608Whole white alabastrum(tetraploid) 25.949
CNS0095609Whole white alabastrum(tetraploid) 312.188
CNS0095610Silvery flower (tetraploid) 19.434
CNS0095611Silvery flower (tetraploid) 210.964
CNS0095612Silvery flower (tetraploid) 37.822
CNS0095613Golden flower (tetraploid) 13.854
CNS0095614Golden flower (tetraploid) 26.165
CNS0095615Golden flower (tetraploid) 34.439
CRA001975CRR073297Stem 111.539
CRR073298Stem 210.939
CRR073299Stem 312.044
CRR073300Leaf 110.225
CRR073301Leaf 29.896
CRR073302Leaf 311.474
CRR073303Juvenile bud 112.093
CRR073304Juvenile bud 211.385
CRR073305Juvenile bud 314.738
CRR073306Third green 12.675
CRR073307Third green 22.267
CRR073308Third green 33.266
CRR073309Second white 11.651
CRR073310Second white 22.109
CRR073311Second white 32.926
CRR073312Silver flowering 10.988
CRR073313Silver flowering 21.543
CRR073314Silver flowering 30.995
CRR073315Gold flowering 18.972
CRR073316Gold flowering 211.161
CRR073317Gold flowering 313.835
CRR073318Tawny withering 110.093
CRR073319Tawny withering 29.940
CRR073320Tawny withering 310.865