Gene detail

Detail information of GWHGAAZE022570

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP00757.1	0	unnamed protein product [Coffea canephora]
COG	YP_003289511.1	4E-91	nicotinate-nucleotide pyrophosphorylase
Swissprot	tr\|Q9ZU32\|NADC_ARATH	0	Nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic (Precursor)
trEMBL	tr\|A0A068TXJ8\|A0A068TXJ8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00757.1}
TAIR10	AT2G01350.1	9E-156	quinolinate phoshoribosyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74709677	74712471	+
GWHAAZE00000006	mRNA	74709677	74712471	+
GWHAAZE00000006	exon	74709677	74709732	+
GWHAAZE00000006	exon	74709825	74709967	+
GWHAAZE00000006	exon	74710032	74710165	+
GWHAAZE00000006	exon	74710249	74710312	+
GWHAAZE00000006	exon	74710402	74710484	+
GWHAAZE00000006	exon	74710606	74710689	+
GWHAAZE00000006	exon	74710781	74710933	+
GWHAAZE00000006	exon	74711065	74711241	+
GWHAAZE00000006	exon	74711586	74711653	+
GWHAAZE00000006	exon	74712057	74712471	+
GWHAAZE00000006	CDS	74709677	74709732	+
GWHAAZE00000006	CDS	74709825	74709967	+
GWHAAZE00000006	CDS	74710032	74710165	+
GWHAAZE00000006	CDS	74710249	74710312	+
GWHAAZE00000006	CDS	74710402	74710484	+
GWHAAZE00000006	CDS	74710606	74710689	+
GWHAAZE00000006	CDS	74710781	74710933	+
GWHAAZE00000006	CDS	74711065	74711241	+
GWHAAZE00000006	CDS	74711586	74711653	+
GWHAAZE00000006	CDS	74712057	74712153	+
GWHAAZE00000006	three_prime_UTR	74712154	74712471	+

Transcript Sequence
>GWHTAAZE022600 ATGTTTGGGATTTCACCGTCTCCATTACTGTCGCCCCATTCAGTTACATCTTCAAGACTTAGTATTAAAATGTCTGCAGCTGCAACTACAAATCATGGAATGTCAGTCAACCCACTGGTTGTTAAGCCTCCTGCACACCCTACTTATGATCTGAAGGGCGTTATCAAACTTGCCCTTGCTGAAGATGCTGGAGATCGAGGGGATGTGACTTGTATGGCCACCATCCCAGTTGACATGGAAGTGGAAGCCCATTTTCTGGCAAAGGAGGATGGAATTGTTGCGGGAATTGCACTTGCAGAAATGATATTCAATGAGGTTGATCCTTCACTAACGGTGGAATGGTCTAAAAGCGATGGGGATAATGTTCATAAAGGACTCCAATTTGGCAAAGTACATGGAAGAGCACACAACATTGTTGTAGCTGAAAGGGTTGTGCTCAACTTTATGCAGAGGATGAGTGGAATAGCAAGTCTTACTAAGGCCATGGCAGATGCTGCACATCCTGCTTACATTTTGGAGACGAGGAAAACTGCTCCAGGCTTACGTCTGGTGGACAAGTGGGCGGTACTGATAGGTGGAGGCCGTAATCACAGGATGGGTTTATTTGATATGGTGATGATAAAAGACAATCATATATCTACAGCTGGAGGTGTAACAAATGCTCTCAAGTCTGTGGATTTGTATTTAGAGAAGAATAATCTTCAAATGGGGGTCGAGATTGAGACCAGGACACTTGAAGAAGTAAACGAGGTACTGAATTATGCATCTCAAACAAAGACATCCTTAAGCAGGATAATGCTTGACAATATGGTTGTCCCACAACCTAGTGGGGATATTGATGTATCCATGCTTAAAGAAGCTGTAGACCTTATCAATGGGAGGTTTGAGACAGAGGCATCAGGCAATGTTACCCTTGAAACAGTACACATGATTGGACAAACTGGCGTGACATATATTTCTAGCGGTGCGCTGACACATTCTGTGAAAGCACTTGACATCTCCCTGAAAATTGATACGGAGCTCGCATTTAAAGTTGGAAGGCGCACTAATCGGGCATAGCACTCTTCATATCCTCTTGCGCTCAGTTGTTTCAAAAAGTTTTGTGTGGTAAGGCATTTTTCATTTTGCTGAAGTAGAAGAAAAAAGGAAATAAGAGTAGTACAGGAGGAGCACTTTTGACTAAAAATCGTCTCCTGAAGCATATTCTATTTTTGAACCACACAGAAATAAAATATGTTTTCAAATTATCCATACACTGGTAGAGAAATGGCTGTGTTAACGTCGTTTGGAAAACTGTATATTGATCTTTGGGTATCAATGCATATTTTTGGACGTGGTTTATCTATTCTAGAATTATTTTGGGTTCAAAGGTAATGA

Network for GWHGAAZE022570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02749.17	QRPTase_N	65	153	2.40E-27
PF01729.20	QRPTase_C	155	336	4.50E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00767	nadC, QPRT	Metabolic pathways	map01100
K00767	nadC, QPRT	Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0009435	biological_process	NAD biosynthetic process
GO:0004514	molecular_function	nicotinate-nucleotide diphosphorylase (carboxylating) activity
GO:0016763	molecular_function	transferase activity, transferring pentosyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.209
	SRR3591706	second leaf	15.676
	SRR3591707	mature leaf	25.994
	SRR3591708	Shoot apex	19.524
	SRR3591709	Stem	22.110
	SRR3591710	White floral bud	43.162
	SRR3591711	White flower	67.300
	SRR3591712	Green floral bud	35.112
	SRR3591713	Yellow flower	67.405
SRP173429	SRR8316895	Juvenile bud stage	18.621
	SRR8316896	Juvenile bud stage	24.833
	SRR8316897	Juvenile bud stage	12.087
	SRR8316894	Third green stage	12.661
	SRR8316900	Third green stage	36.242
	SRR8316901	Third green stage	33.182
	SRR8316898	Complete white stage	11.160
	SRR8316899	Complete white stage	43.845
	SRR8316903	Complete white stage	18.626
	SRR8316902	Silver flowering stage	15.603
	SRR8316904	Silver flowering stage	22.747
	SRR8316905	Silver flowering stage	12.287
	SRR8316906	Gold flowering stage	45.930
	SRR8316907	Gold flowering stage	39.439
	SRR8316908	Gold flowering stage	57.333
SRP132670	SRR6706286	Control	46.299
	SRR6706287	Light intensity 50%	42.708
	SRR6706288	Light intensity 20%	46.739
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.036
	CNS0095593	Slightly white alabastrum(diploid) 2	20.582
	CNS0095594	Slightly white alabastrum(diploid) 3	16.775
	CNS0095595	Whole white alabastrum(diploid) 2	16.643
	CNS0095596	Whole white alabastrum(diploid) 3	18.129
	CNS0095597	Whole white alabastrum(diploid) 4	11.453
	CNS0095598	Silvery flower (diploied) 1	25.721
	CNS0095599	Silvery flower (diploied) 2	21.621
	CNS0095600	Silvery flower (diploied) 3	36.999
	CNS0095601	Golden flower (diploid) 1	18.846
	CNS0095602	Golden flower (diploid) 2	33.980
	CNS0095603	Golden flower (diploid) 3	30.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.503
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.464
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.117
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.621
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.093
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.931
	CNS0095610	Silvery flower (tetraploid) 1	44.437
	CNS0095611	Silvery flower (tetraploid) 2	46.264
	CNS0095612	Silvery flower (tetraploid) 3	49.937
	CNS0095613	Golden flower (tetraploid) 1	27.859
	CNS0095614	Golden flower (tetraploid) 2	38.268
	CNS0095615	Golden flower (tetraploid) 3	35.141
CRA001975	CRR073297	Stem 1	22.608
	CRR073298	Stem 2	23.225
	CRR073299	Stem 3	19.252
	CRR073300	Leaf 1	23.869
	CRR073301	Leaf 2	24.638
	CRR073302	Leaf 3	20.382
	CRR073303	Juvenile bud 1	22.060
	CRR073304	Juvenile bud 2	18.014
	CRR073305	Juvenile bud 3	17.865
	CRR073306	Third green 1	12.379
	CRR073307	Third green 2	12.026
	CRR073308	Third green 3	11.305
	CRR073309	Second white 1	14.888
	CRR073310	Second white 2	18.734
	CRR073311	Second white 3	18.314
	CRR073312	Silver flowering 1	16.709
	CRR073313	Silver flowering 2	15.976
	CRR073314	Silver flowering 3	17.597
	CRR073315	Gold flowering 1	20.870
	CRR073316	Gold flowering 2	33.486
	CRR073317	Gold flowering 3	20.568
	CRR073318	Tawny withering 1	16.349
	CRR073319	Tawny withering 2	23.395
	CRR073320	Tawny withering 3	21.959