Gene detail

Detail information of GWHGAAZE022510

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651276.1	0	PREDICTED: two-component response regulator ARR1 isoform X1 [Vitis vinifera]
COG	YP_002248567.1	1E-15	FrgC protein
Swissprot	tr\|Q9ZWJ9\|ARR2_ARATH	1E-113	Two-component response regulator ARR2
trEMBL	tr\|A0A067KT22\|A0A067KT22_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP38123.1}
TAIR10	AT4G16110.1	4E-86	response regulator 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73668816	73673421	-
GWHAAZE00000006	mRNA	73668816	73673421	-
GWHAAZE00000006	exon	73668816	73669907	-
GWHAAZE00000006	exon	73670152	73670228	-
GWHAAZE00000006	exon	73670445	73670843	-
GWHAAZE00000006	exon	73670917	73671069	-
GWHAAZE00000006	exon	73673224	73673421	-
GWHAAZE00000006	five_prime_UTR	73673339	73673421	-
GWHAAZE00000006	CDS	73673224	73673338	-
GWHAAZE00000006	CDS	73670917	73671069	-
GWHAAZE00000006	CDS	73670445	73670843	-
GWHAAZE00000006	CDS	73670152	73670228	-
GWHAAZE00000006	CDS	73668816	73669907	-

Transcript Sequence
>GWHTAAZE022540 AGGTTTTGGTACAAGTAATGGTGGAAGTGGAGTTGGTTGTTTGAGAGAAAAAGAGGTAGAGTGAAATTCTTAAGGATTTTGGCATGGCTAAACTTGTGCCGGATCAATTTCCGGCTGGTTTGAGAGTACTCGTGGTTGACGACGACGTTGTTTGCCTGAAGATTTTGGTGCAAATGCTTCAGAAATGCGCGTACAATGTTACATGTAGCACCCATGCTATTGTTGCTTTGAACCTATTACGGGAAAAAAAAGGCTCTTTCGATTTGGTGCTAAGCGACGTTCATATGCCTGACATGGATGGCTTTAAACTCCTCGAACACGTTGGGCTAGAAATGGACCTTCCTGTCATAATGATATCTGGTGATGGAAGAACCAGCACTGTCTTGAGGGGAATTAGGCACGGGGCTTGTGATTTCTTGGTTAAGCCCGTACGTGAAGAAGAGTTGAAGAATATATGGCAGCATGTTGTAAGGAAAATGTGGAATGGAAATAAAGAACACGAACATTCGGGTAGTGTGAATGAAAATGATAGGCATAAAAGTGGAGTTGACGATGCTGACTATGCTTCTTCTGTTAGTGAAGGATCTGAAGGAATAAGAAAAACACATAAAAAAAAGAAAGATGTTAAAGATGAAGGTGATGGTGAATTGGAAAATGAGGACCCAACTGCATCAAAGAAGCCACGTGTAGTGTGGTCTGTAGAGCTCCATCAACAATTTGTCAGTGCTGTGAATCAACTTGGAATTGATAAGGCTGTACCAAAGAGAATTCTTGAATTGATGAATGTTCCAGGTTTGACGAGAGAAAATGTTGCAAGCCATTTGCAGAAATTCAGGCTCTATTTAAAAAGGTTGAGCGGAGTTGATCAACAACATGTTGGGATTCCTAGTTCAGTTTGTGGATCGGATCAGAATCCAAAACTAACTTCGGGAAGATTTGATATCCAAGCTTTAGCAGCCTCCGGTCAAATTCCCCCAGAAACGTTGGCAGCATTCCAAGCTGAGCTTTTAGGTCAACCGATGGACCAAGCACCTCTACTACAAGCAACCCTACAAGGACCCAAGTGTACTCTTGCCAATCATGGTGTATCATATGGACCCCCTCTGATTAAGGCCCCATCCAACATATCCAAACAGTCTGCTCAACCCATCATATCCAGTGATGATGTTCCTTCTGGACTTGTCTGGCCATCTAATAGCCTCGGTACTAGGGGACCTGGCAACAATATTGACGGGTTGGGGGCTCAACATGGTACCATGTTAATGAGTATGATGCCACATCAGCAACAACAGCGACCGAAACAATCGATTGTGGACCCTGGCCCTTCGATTAACGTGCAGCCTTCTTGCCTTGTGATTCCTGCTCAGTCATCGACTAGCTTTCAAGTGGCAAATAGCCCTGGTTTAGTTAGTCATAGCTGCAGGTTTAACGGAAGCTCTATTATTGATTATAGCCTTCTTACATCTCAACCAACAGCTGTGCTTAATGGGTACTCAGGTCTAGGTTCTAGTTCTCCATGTTTGTCATCTTGCTCGGTGATTGCTGACACTGGCGTTGGTCGGCAAGTTCAAAATTCAGCCCCAATATTTAGTGCTGGAATACATTTGCCATGTCATCTTCCTAGTATTAGCAGTGTACAAGGTTCTTATAGTGCTAATTCCAGTCAAGGGCTTGACCAGGGACATTTCAAAAATCTTGGGTTTGTTGGTAAGGGGACAAAATCCATTCCGAGCCGTTTTGCAGTGGATGACCTTGAATTCCCAATCAGCAACTTGAATCAGCAAAATTCATACAGGGAGAGCAGTGGAAAAAAAGTGAAGCAGGAGCTGAATGTGGATTTTATTGAGAATGCTAAAATGGGCACCTCTATCTTGCAGCATTTTGCTCCAAATGATTTCACGAGTGTTTTCTCTGAATAG

Network for GWHGAAZE022510

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	15	123	4.80E-22
PF00249.32	Myb_DNA-binding	201	249	5.70E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.581
	SRR3591706	second leaf	4.173
	SRR3591707	mature leaf	1.512
	SRR3591708	Shoot apex	11.613
	SRR3591709	Stem	6.013
	SRR3591710	White floral bud	21.362
	SRR3591711	White flower	2.570
	SRR3591712	Green floral bud	102.800
	SRR3591713	Yellow flower	1.057
SRP173429	SRR8316895	Juvenile bud stage	33.038
	SRR8316896	Juvenile bud stage	44.726
	SRR8316897	Juvenile bud stage	22.422
	SRR8316894	Third green stage	30.131
	SRR8316900	Third green stage	87.260
	SRR8316901	Third green stage	61.119
	SRR8316898	Complete white stage	10.076
	SRR8316899	Complete white stage	194.159
	SRR8316903	Complete white stage	21.516
	SRR8316902	Silver flowering stage	1.086
	SRR8316904	Silver flowering stage	1.835
	SRR8316905	Silver flowering stage	0.980
	SRR8316906	Gold flowering stage	1.337
	SRR8316907	Gold flowering stage	1.160
	SRR8316908	Gold flowering stage	1.661
SRP132670	SRR6706286	Control	81.017
	SRR6706287	Light intensity 50%	65.412
	SRR6706288	Light intensity 20%	64.649
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.124
	CNS0095593	Slightly white alabastrum(diploid) 2	53.822
	CNS0095594	Slightly white alabastrum(diploid) 3	19.127
	CNS0095595	Whole white alabastrum(diploid) 2	35.999
	CNS0095596	Whole white alabastrum(diploid) 3	38.040
	CNS0095597	Whole white alabastrum(diploid) 4	31.680
	CNS0095598	Silvery flower (diploied) 1	3.351
	CNS0095599	Silvery flower (diploied) 2	2.652
	CNS0095600	Silvery flower (diploied) 3	8.948
	CNS0095601	Golden flower (diploid) 1	2.533
	CNS0095602	Golden flower (diploid) 2	7.496
	CNS0095603	Golden flower (diploid) 3	7.419
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.725
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.911
	CNS0095606	Slightly white alabastrum(tetraploid) 3	102.743
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.083
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.425
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.189
	CNS0095610	Silvery flower (tetraploid) 1	3.303
	CNS0095611	Silvery flower (tetraploid) 2	5.052
	CNS0095612	Silvery flower (tetraploid) 3	0.874
	CNS0095613	Golden flower (tetraploid) 1	0.866
	CNS0095614	Golden flower (tetraploid) 2	1.508
	CNS0095615	Golden flower (tetraploid) 3	1.087
CRA001975	CRR073297	Stem 1	93.908
	CRR073298	Stem 2	95.489
	CRR073299	Stem 3	84.471
	CRR073300	Leaf 1	134.436
	CRR073301	Leaf 2	120.576
	CRR073302	Leaf 3	102.749
	CRR073303	Juvenile bud 1	104.162
	CRR073304	Juvenile bud 2	56.380
	CRR073305	Juvenile bud 3	183.031
	CRR073306	Third green 1	1.324
	CRR073307	Third green 2	0.515
	CRR073308	Third green 3	0.999
	CRR073309	Second white 1	0.208
	CRR073310	Second white 2	0.058
	CRR073311	Second white 3	0.233
	CRR073312	Silver flowering 1	0.195
	CRR073313	Silver flowering 2	0.106
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.852
	CRR073316	Gold flowering 2	6.233
	CRR073317	Gold flowering 3	3.309
	CRR073318	Tawny withering 1	3.939
	CRR073319	Tawny withering 2	5.550
	CRR073320	Tawny withering 3	3.193