Gene detail

Detail information of GWHGAAZE022481

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006350088.1	3.0585E-142	PREDICTED: anthranilate synthase component II-like [Solanum tuberosum]
COG	YP_007130796.1	4E-78	glutamine amidotransferase of anthranilate synthase
Swissprot	tr\|Q42565\|ASB1_ARATH	2E-132	Anthranilate synthase beta subunit 1, chloroplastic (Precursor)
trEMBL	tr\|K4DCA5\|K4DCA5_SOLLC	3E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g010180.1.1}
TAIR10	AT1G25220.1	4E-106	anthranilate synthase beta subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73225026	73229836	+
GWHAAZE00000006	mRNA	73225026	73229836	+
GWHAAZE00000006	exon	73225026	73225307	+
GWHAAZE00000006	exon	73227998	73228068	+
GWHAAZE00000006	exon	73228206	73228243	+
GWHAAZE00000006	exon	73228332	73228442	+
GWHAAZE00000006	exon	73228803	73228902	+
GWHAAZE00000006	exon	73229245	73229380	+
GWHAAZE00000006	exon	73229729	73229836	+
GWHAAZE00000006	CDS	73225026	73225307	+
GWHAAZE00000006	CDS	73227998	73228068	+
GWHAAZE00000006	CDS	73228206	73228243	+
GWHAAZE00000006	CDS	73228332	73228442	+
GWHAAZE00000006	CDS	73228803	73228902	+
GWHAAZE00000006	CDS	73229245	73229380	+
GWHAAZE00000006	CDS	73229729	73229836	+

Transcript Sequence
>GWHTAAZE022511 ATGGCGACTCGGTGTTTGTCTCAGTCCTCCTCTAACATTCAGCTCAGACCATCACTATTGTCTCACATGCCAATAAACCCGTCATCAGCACTATCTATTCCATTTCCTTCACTCAAGGGTAAGGCTTTCAATGGTGGACTCCTCCGAAAGGAAACTATGGGGGTTCCCTTGTCCGTCTCCGAAAAGAACTCGATTTTCTCAGCAGTTGTTTCAGATAGGAAGACTACCAGTCCGGTTATCGTCATTGATAATTACGACAGCTTCACTTACAACCTTTGTCAGTATATTGGAGAGCTGGGTTGTAATTTTGAGGTTTACCGGAATGATGAGCTTACTGTGGATGAACTGAAAAAAAAAAATCCAAGAGGAATTCTTATATCCCCTGGACCTGGTGAACCTAAAGAATCAGGAATCTCGTTGCAAACTGTATTGGAACTTGGTCCCATGGTGCCATTATTCGGTGTATGCATGGGATTGCAGTGTATTGGTGAGGCTTTTGGAGGGAAAATTGTGCGCTCTCCTTATGGTGTTATGCATGGAAAAAGTTCTCCTGTCTATTATAACGAGGGTGGGGAAGATGGTTTATTTGCAGGCTTATCGAACCCTTTTACTGCTGGTAGATATCACAGCCTTGTGATTGAAAAGGAAACTTTTCCTAGTGAAGAACTTGAGATAACTGCGTGGACAGAGGATGGACTGGTAATGGGTGCTCGCCACAAAATATACAGACACCTCCAGGGGGTACAGTTCCATCCAGAAAGCATAATTACCACCGAAGGCAAGACGATTGTTCATAATTTCATTAAACAGTTAGAGATGAAGGAAGAAGCTGAATCTCAAAATTAG

Network for GWHGAAZE022481

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00117.29	GATase	81	269	1.50E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01658	trpG	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Phenazine biosynthesis	map00405
		Quorum sensing	map02024
		Biofilm formation - Pseudomonas aeruginosa	map02025

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.609
	SRR3591706	second leaf	49.267
	SRR3591707	mature leaf	79.917
	SRR3591708	Shoot apex	34.730
	SRR3591709	Stem	49.104
	SRR3591710	White floral bud	90.839
	SRR3591711	White flower	126.902
	SRR3591712	Green floral bud	73.316
	SRR3591713	Yellow flower	189.097
SRP173429	SRR8316895	Juvenile bud stage	38.544
	SRR8316896	Juvenile bud stage	60.622
	SRR8316897	Juvenile bud stage	27.310
	SRR8316894	Third green stage	20.595
	SRR8316900	Third green stage	77.850
	SRR8316901	Third green stage	87.033
	SRR8316898	Complete white stage	43.147
	SRR8316899	Complete white stage	80.260
	SRR8316903	Complete white stage	63.039
	SRR8316902	Silver flowering stage	56.625
	SRR8316904	Silver flowering stage	67.472
	SRR8316905	Silver flowering stage	37.112
	SRR8316906	Gold flowering stage	143.105
	SRR8316907	Gold flowering stage	137.967
	SRR8316908	Gold flowering stage	152.916
SRP132670	SRR6706286	Control	53.420
	SRR6706287	Light intensity 50%	53.595
	SRR6706288	Light intensity 20%	55.838
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.420
	CNS0095593	Slightly white alabastrum(diploid) 2	59.941
	CNS0095594	Slightly white alabastrum(diploid) 3	70.068
	CNS0095595	Whole white alabastrum(diploid) 2	63.463
	CNS0095596	Whole white alabastrum(diploid) 3	70.043
	CNS0095597	Whole white alabastrum(diploid) 4	59.364
	CNS0095598	Silvery flower (diploied) 1	81.049
	CNS0095599	Silvery flower (diploied) 2	81.465
	CNS0095600	Silvery flower (diploied) 3	141.867
	CNS0095601	Golden flower (diploid) 1	102.822
	CNS0095602	Golden flower (diploid) 2	154.231
	CNS0095603	Golden flower (diploid) 3	150.347
	CNS0095604	Slightly white alabastrum(tetraploid) 1	70.813
	CNS0095605	Slightly white alabastrum(tetraploid) 2	73.494
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.825
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.963
	CNS0095608	Whole white alabastrum(tetraploid) 2	60.403
	CNS0095609	Whole white alabastrum(tetraploid) 3	106.772
	CNS0095610	Silvery flower (tetraploid) 1	236.766
	CNS0095611	Silvery flower (tetraploid) 2	266.186
	CNS0095612	Silvery flower (tetraploid) 3	288.194
	CNS0095613	Golden flower (tetraploid) 1	311.215
	CNS0095614	Golden flower (tetraploid) 2	313.007
	CNS0095615	Golden flower (tetraploid) 3	445.030
CRA001975	CRR073297	Stem 1	39.953
	CRR073298	Stem 2	38.104
	CRR073299	Stem 3	45.985
	CRR073300	Leaf 1	54.956
	CRR073301	Leaf 2	42.457
	CRR073302	Leaf 3	60.889
	CRR073303	Juvenile bud 1	67.871
	CRR073304	Juvenile bud 2	97.392
	CRR073305	Juvenile bud 3	55.128
	CRR073306	Third green 1	63.011
	CRR073307	Third green 2	46.437
	CRR073308	Third green 3	46.220
	CRR073309	Second white 1	165.080
	CRR073310	Second white 2	142.688
	CRR073311	Second white 3	110.372
	CRR073312	Silver flowering 1	152.332
	CRR073313	Silver flowering 2	145.187
	CRR073314	Silver flowering 3	111.523
	CRR073315	Gold flowering 1	54.200
	CRR073316	Gold flowering 2	74.858
	CRR073317	Gold flowering 3	56.643
	CRR073318	Tawny withering 1	22.851
	CRR073319	Tawny withering 2	25.928
	CRR073320	Tawny withering 3	21.942