Gene detail

Detail information of GWHGAAZE022477

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002312482.2	6.1463E-167	hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
COG	YP_007322312.1	1E-45	acid phosphatase
Swissprot	tr\|Q8H129\|PPA3_ARATH	9E-153	Purple acid phosphatase 3 (Precursor)
trEMBL	tr\|B9HJK3\|B9HJK3_POPTR	2E-167	Uncharacterized protein {ECO:0000313\|EMBL:EEE89849.2}
TAIR10	AT1G14700.1	4E-123	purple acid phosphatase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73186176	73189734	+
GWHAAZE00000006	mRNA	73186176	73189734	+
GWHAAZE00000006	exon	73186176	73186364	+
GWHAAZE00000006	exon	73188017	73188173	+
GWHAAZE00000006	exon	73188367	73188474	+
GWHAAZE00000006	exon	73188591	73188718	+
GWHAAZE00000006	exon	73188930	73189058	+
GWHAAZE00000006	exon	73189370	73189437	+
GWHAAZE00000006	exon	73189530	73189734	+
GWHAAZE00000006	CDS	73186176	73186364	+
GWHAAZE00000006	CDS	73188017	73188173	+
GWHAAZE00000006	CDS	73188367	73188474	+
GWHAAZE00000006	CDS	73188591	73188718	+
GWHAAZE00000006	CDS	73188930	73189058	+
GWHAAZE00000006	CDS	73189370	73189437	+
GWHAAZE00000006	CDS	73189530	73189734	+

Transcript Sequence
>GWHTAAZE022507 ATGAAGCAGCAGCCCATGTTTCTCTCTCTATTAATCAGAAGTATTATTCTAGCTTTCTGTTTTGCACACGCGGTGGCCGAGCTTGAGAGATTCGAACACCCGCCAAAAGCCGATGGATCGCTTAGCACTTTGGTCATCGGAGACTGGGGAAGAAGAGGAACTCACAACCAATCTCAAGTTGCTCTTCAGATGGGAATAATTGGAGAGAAGTTGGACGTAGACTTTATAATATCGACTGGTGATAACTTTTATGACAGTGGATTAACGGATGTAAATGATCCAGCATTTGACGAGTCATTTACCCAAATCTATACTGCCCAAAGCTTGCAAAAGCAATGGTACTCTGTTTTGGGGAACCATGACTACAGAGGAAATGCTATGGCACAATTGAGTCCAATCCTTACACACAGGGATACAAGATGGCTGTGCCTAAGATCTTTTATTGTCAACTCGGAAATGGCAGATTTTTTCTTCATAGATACAACTCCATTCCAAGAAAAATACTTTACAAATCCAGAGGACCATACTTACGACTGGAGAGAAATTCTTCCTCGCAAGCACTACCTTTCCAATCTCTTGAGGGATGTGGATTTGGCATTGAGGGAATCAGGAGCAAAATGGAAGATAGTGGTTGGTCACCACACTATTAGAAGTATTGGATTACACGGGGACACCATTGAACTCGTAGCTCAGCTTCTTCCTATCCTTGAGGCAAATGATGTTGATCTTTACATAAATGGACATGACCACTGCTTGGAACACATTAGTAGTACAGACAGTCCACTTCAGTTCTTGACCAGCGGTGGAGGATCGAAGGCATGGAGAGGAGAAAGGAACACTGACGAATCAATATTTTACTATGACGGACAAGGGTTTTTGTCGCTGCAAATTGGCGAAAATGGAATTGATATCAAGTTCTATGATATTGGTGGGAATGTTATCCACAAATGGAGTAGAGACAAATCTTTTTACTCATTCATGTAG

Network for GWHGAAZE022477

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	42	251	2.20E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14379	ACP5	Metabolic pathways	map01100
		Riboflavin metabolism	map00740
		Lysosome	map04142
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0003993	molecular_function	acid phosphatase activity
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	155.356
	SRR3591706	second leaf	4.560
	SRR3591707	mature leaf	62.915
	SRR3591708	Shoot apex	2.984
	SRR3591709	Stem	236.031
	SRR3591710	White floral bud	31.258
	SRR3591711	White flower	60.630
	SRR3591712	Green floral bud	8.871
	SRR3591713	Yellow flower	29.847
SRP173429	SRR8316895	Juvenile bud stage	1.908
	SRR8316896	Juvenile bud stage	3.571
	SRR8316897	Juvenile bud stage	0.916
	SRR8316894	Third green stage	3.962
	SRR8316900	Third green stage	16.992
	SRR8316901	Third green stage	19.498
	SRR8316898	Complete white stage	25.713
	SRR8316899	Complete white stage	116.788
	SRR8316903	Complete white stage	49.583
	SRR8316902	Silver flowering stage	20.045
	SRR8316904	Silver flowering stage	24.740
	SRR8316905	Silver flowering stage	11.504
	SRR8316906	Gold flowering stage	9.722
	SRR8316907	Gold flowering stage	11.525
	SRR8316908	Gold flowering stage	12.400
SRP132670	SRR6706286	Control	20.290
	SRR6706287	Light intensity 50%	15.186
	SRR6706288	Light intensity 20%	11.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.386
	CNS0095593	Slightly white alabastrum(diploid) 2	12.056
	CNS0095594	Slightly white alabastrum(diploid) 3	7.558
	CNS0095595	Whole white alabastrum(diploid) 2	9.210
	CNS0095596	Whole white alabastrum(diploid) 3	7.572
	CNS0095597	Whole white alabastrum(diploid) 4	18.029
	CNS0095598	Silvery flower (diploied) 1	6.734
	CNS0095599	Silvery flower (diploied) 2	6.171
	CNS0095600	Silvery flower (diploied) 3	9.607
	CNS0095601	Golden flower (diploid) 1	3.676
	CNS0095602	Golden flower (diploid) 2	3.229
	CNS0095603	Golden flower (diploid) 3	5.356
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.331
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.659
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.703
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.834
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.506
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.318
	CNS0095610	Silvery flower (tetraploid) 1	9.790
	CNS0095611	Silvery flower (tetraploid) 2	6.227
	CNS0095612	Silvery flower (tetraploid) 3	8.868
	CNS0095613	Golden flower (tetraploid) 1	5.224
	CNS0095614	Golden flower (tetraploid) 2	5.121
	CNS0095615	Golden flower (tetraploid) 3	1.833
CRA001975	CRR073297	Stem 1	3.304
	CRR073298	Stem 2	3.380
	CRR073299	Stem 3	2.622
	CRR073300	Leaf 1	8.938
	CRR073301	Leaf 2	7.443
	CRR073302	Leaf 3	7.911
	CRR073303	Juvenile bud 1	20.851
	CRR073304	Juvenile bud 2	7.944
	CRR073305	Juvenile bud 3	22.614
	CRR073306	Third green 1	2.759
	CRR073307	Third green 2	6.206
	CRR073308	Third green 3	4.132
	CRR073309	Second white 1	1.419
	CRR073310	Second white 2	1.622
	CRR073311	Second white 3	0.557
	CRR073312	Silver flowering 1	1.054
	CRR073313	Silver flowering 2	1.860
	CRR073314	Silver flowering 3	0.866
	CRR073315	Gold flowering 1	9.070
	CRR073316	Gold flowering 2	15.722
	CRR073317	Gold flowering 3	15.110
	CRR073318	Tawny withering 1	32.939
	CRR073319	Tawny withering 2	70.922
	CRR073320	Tawny withering 3	43.528