Gene detail

Detail information of GWHGAAZE022446

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045366.1	0	Indeterminate(ID)-domain 5, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9ZUL3\|IDD5_ARATH	2E-115	Protein indeterminate-domain 5, chloroplastic {ECO:0000303\|PubMed:16784536} (Precursor)
trEMBL	tr\|A0A061E9C5\|A0A061E9C5_THECC	0	Indeterminate(ID)-domain 5, putative isoform 1 {ECO:0000313\|EMBL:EOY01198.1}
TAIR10	AT2G02070.1	2E-85	indeterminate(ID)-domain 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72650138	72654867	+
GWHAAZE00000006	mRNA	72650138	72654867	+
GWHAAZE00000006	exon	72650138	72650588	+
GWHAAZE00000006	exon	72653861	72654867	+
GWHAAZE00000006	CDS	72650138	72650588	+
GWHAAZE00000006	CDS	72653861	72654867	+

Transcript Sequence
>GWHTAAZE022476 ATGTTAAAAAAAAAAGCAGATCCAGATGCAGAGATAATAGCACTATCTCCCAAGAGCCTAATGGCAACAAACAGGTTCATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACTTACAGCTCCACAGAAGAGGACATAACTTGCCTTGGAAGCTGAAACAGAAGAGTACAAAAGATCAGGTGAAGAGGAAGGTTTATCTTTGCCCAGAGCCCACTTGTGTGCACCATGACCCCTCAAGGCCCCTTGGAGACCTCACTGGTATTAAGAAGCACTATTCAAGAAAGCATGGTGAGAAGAAGTACAAGTGCGATAAGTGTTCTAAGAGATATGCAGTTCAATCTGATTGGAAAGCCCACTCCAAAACTTGTGGCACTAGAGAGTATAGATGCGACTGTGGTACTCTCTTCTCTAGGTACGTAACTAATCTATATATCCTTTCATTCGTTTACCCTCATTATTTTGTCAGGCGCGATAGTTTCATCACGCACAGAGCATTTTGTGAGGCACTTGCTCATGAAAGTGGAAGGCACCCTCCTACCCTAAGCACCATTAGTAACCATCTATTTGGAAGCAATCACATAAACTTAGGCCTCTCTCAAGTGGGCTCCCAAATTTCCTTAAATGATCACAACAATCCATCTCCCAACAAGTATGACCACCTTCTACCTCCATCAAATAATCCTTCTAATTCCTTCACTCATCAATCTCCGCAATCTCCATTTCTCATGCCAGATTCCACCCAACAGCAACCCCCCTATCAAGAACACCAAAATTCCGTAATGCCAAACAAGCCCTTTCATGGGTTGATGCAACTCCCTGACCTCCAAAGTAACAATAACAATTCCCCATCTAATCTCTTTAACCTCGAATTCTTTTCGAGTACCAATAGCAGTATTGGCAACAACAACAACAACAATAACAGGAACAGCAGTATGTCTTCTTCAGGTTTCGTATTCTCTGATCATTTTAACAATGGCAATACTGGCAGTGGCGGTCAAGGAACGTCTCTCTTTTCGACTGACCATGTGGGGTCTGGTCTCTCTTCTATTTACAACACTCAAAATTCGACACCACATATGTCAGCTACTGCACTGCTTCAAAAAGCGGCTCAAATTGGTTCAACCACCAGCAGCAAGGGTGGGTCATTGTCAAAGATGGAGAATGAAAGTCAACTTCAAGGACTAATGGATTCACTTGCAAATGCAGGCTCTTCTATGTACTCAACAGAAGAGGAGAATGGCTTTTGCGGATTTAGCGAGAGTGGGATGAGATTGGAGCAACCGAACATTAATGTTAACGAGGATTTTGGGAAAATGGAGGCGGCTAAGTTGAACAGGAACTTCGGGCTAAGTATTGGAGGGAGTGATAGATTGACACTGGATTTTTTAGGTGTTGGGGGTGGAGGAGAAGGGATTTTGAGAAATATGGGTGGGGGTTTTCTCAAAGCATAA

Network for GWHGAAZE022446

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12171.9	zf-C2H2_jaz	26	48	2.90E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.616
	SRR3591706	second leaf	23.179
	SRR3591707	mature leaf	29.287
	SRR3591708	Shoot apex	22.900
	SRR3591709	Stem	17.550
	SRR3591710	White floral bud	17.919
	SRR3591711	White flower	18.272
	SRR3591712	Green floral bud	4.588
	SRR3591713	Yellow flower	6.615
SRP173429	SRR8316895	Juvenile bud stage	7.524
	SRR8316896	Juvenile bud stage	4.772
	SRR8316897	Juvenile bud stage	2.812
	SRR8316894	Third green stage	2.497
	SRR8316900	Third green stage	1.861
	SRR8316901	Third green stage	3.208
	SRR8316898	Complete white stage	0.489
	SRR8316899	Complete white stage	17.804
	SRR8316903	Complete white stage	4.354
	SRR8316902	Silver flowering stage	2.222
	SRR8316904	Silver flowering stage	2.095
	SRR8316905	Silver flowering stage	0.911
	SRR8316906	Gold flowering stage	1.165
	SRR8316907	Gold flowering stage	2.131
	SRR8316908	Gold flowering stage	3.829
SRP132670	SRR6706286	Control	6.219
	SRR6706287	Light intensity 50%	6.036
	SRR6706288	Light intensity 20%	4.799
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.476
	CNS0095593	Slightly white alabastrum(diploid) 2	13.722
	CNS0095594	Slightly white alabastrum(diploid) 3	8.751
	CNS0095595	Whole white alabastrum(diploid) 2	12.888
	CNS0095596	Whole white alabastrum(diploid) 3	0.815
	CNS0095597	Whole white alabastrum(diploid) 4	6.783
	CNS0095598	Silvery flower (diploied) 1	41.254
	CNS0095599	Silvery flower (diploied) 2	29.474
	CNS0095600	Silvery flower (diploied) 3	14.833
	CNS0095601	Golden flower (diploid) 1	28.326
	CNS0095602	Golden flower (diploid) 2	29.546
	CNS0095603	Golden flower (diploid) 3	27.885
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.973
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.024
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.923
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.794
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.146
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.691
	CNS0095610	Silvery flower (tetraploid) 1	4.021
	CNS0095611	Silvery flower (tetraploid) 2	7.411
	CNS0095612	Silvery flower (tetraploid) 3	3.431
	CNS0095613	Golden flower (tetraploid) 1	4.231
	CNS0095614	Golden flower (tetraploid) 2	3.927
	CNS0095615	Golden flower (tetraploid) 3	3.733
CRA001975	CRR073297	Stem 1	10.545
	CRR073298	Stem 2	8.560
	CRR073299	Stem 3	7.826
	CRR073300	Leaf 1	4.761
	CRR073301	Leaf 2	7.290
	CRR073302	Leaf 3	2.191
	CRR073303	Juvenile bud 1	4.480
	CRR073304	Juvenile bud 2	0.763
	CRR073305	Juvenile bud 3	6.706
	CRR073306	Third green 1	0.126
	CRR073307	Third green 2	0.375
	CRR073308	Third green 3	0.297
	CRR073309	Second white 1	0.261
	CRR073310	Second white 2	0.188
	CRR073311	Second white 3	0.094
	CRR073312	Silver flowering 1	0.039
	CRR073313	Silver flowering 2	0.738
	CRR073314	Silver flowering 3	0.908
	CRR073315	Gold flowering 1	16.397
	CRR073316	Gold flowering 2	30.363
	CRR073317	Gold flowering 3	11.938
	CRR073318	Tawny withering 1	3.046
	CRR073319	Tawny withering 2	1.583
	CRR073320	Tawny withering 3	1.912