Gene detail

Detail information of GWHGAAZE022404

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006844043.1	0	hypothetical protein AMTR_s00006p00241880 [Amborella trichopoda]
COG	YP_008733525.1	4E-98	glutamate--ammonia ligase
Swissprot	tr\|Q43785\|GLNA3_MEDSA	0	Glutamine synthetase nodule isozyme
trEMBL	tr\|W1PCQ1\|W1PCQ1_AMBTC	0	Glutamine synthetase {ECO:0000256\|RuleBase:RU004356}
TAIR10	AT5G37600.1	8E-158	glutamine synthase clone R1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71994694	71998779	+
GWHAAZE00000006	mRNA	71994694	71998779	+
GWHAAZE00000006	exon	71994694	71994722	+
GWHAAZE00000006	exon	71994985	71995033	+
GWHAAZE00000006	exon	71995629	71995735	+
GWHAAZE00000006	exon	71996487	71996574	+
GWHAAZE00000006	exon	71996689	71996817	+
GWHAAZE00000006	exon	71997179	71997253	+
GWHAAZE00000006	exon	71997388	71997441	+
GWHAAZE00000006	exon	71997933	71997970	+
GWHAAZE00000006	exon	71998102	71998261	+
GWHAAZE00000006	exon	71998446	71998506	+
GWHAAZE00000006	exon	71998688	71998779	+
GWHAAZE00000006	CDS	71994694	71994722	+
GWHAAZE00000006	CDS	71994985	71995033	+
GWHAAZE00000006	CDS	71995629	71995735	+
GWHAAZE00000006	CDS	71996487	71996574	+
GWHAAZE00000006	CDS	71996689	71996817	+
GWHAAZE00000006	CDS	71997179	71997253	+
GWHAAZE00000006	CDS	71997388	71997441	+
GWHAAZE00000006	CDS	71997933	71997970	+
GWHAAZE00000006	CDS	71998102	71998261	+
GWHAAZE00000006	CDS	71998446	71998506	+
GWHAAZE00000006	CDS	71998688	71998779	+

Transcript Sequence
>GWHTAAZE022434 CCCGGCGAGGACAGTGAAGTCATCCTCGTTGCCCAAGCAATATTCAAGGACCCGTTTAGGGGAGGCGACAATCTTTTGGCTATGTGCGATGCGTACACACCAGCAGGAGAGCCAATACCAACAAACAAAAGGTTCAATGCGGCCAAAATCTTTAGCCACCCTGATGTTGCCGCCGAGGTGCCTTGGTATGGGATTGAGCAGGAATACACTCTTCTTCAAAAGGACGTCCGCTGGCCTCTCGGCTGGCCTGTTGGTGGCTTCCCCGGCCCACAAGGACCTTACTACTGTGGAATAGGAGCTGACAAGGCATTTGGTCGGGAAGTTGTCGATGCCCATTACAAGGCTTGCCTCTATGCTGGTATTAATATCAGCGGTATCAATGGAGAGGTTATGCCTGGCCAGTGGGAATTTCAAGTTGGACCCTCAGTTGGCATTTCTGCGGGGGATGAAATATGGGTTGCTCGTTATATTTTGGAGAGGATTACAGAAATTGCTGGAATAGTTGTGTCATTTGACCCCAAACCAATCCCGGGTGATTGGAATGGTGCCGGAGCTCACACTAACTACAGTACCAAGTCAATGCGGGAAACTGGTGGGATTGATGTGATAAAGAAGGCAATAGAGAAGCTGGGCATGCGCCACAAAGATCACATTGCAGCTTATGGGGAGGGCAATGAGAGGAGGTTGACTGGTCACCATGAGACTGCTGATATTAATACTTTCTCCTGGGGTGTTGCAAACAGGGGTGCCTCAATACGTGTTGGACGTGATACCGAAAAAGATGGAAAAGGTTACTTTGAGGACAGAAGGCCAGCATCTAACATGGACCCATATGTTGTCACCTCCATGATCGCCAACACCACCATCCTCTGGAAGCCTTAG

Network for GWHGAAZE022404

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00120.25	Gln-synt_C	106	191	1.30E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01915	glnA, GLUL	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Glyoxylate and dicarboxylate metabolism	map00630
		Nitrogen metabolism	map00910
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220
		Two-component system	map02020
		Necroptosis	map04217
		Glutamatergic synapse	map04724
		GABAergic synapse	map04727

Gene Ontology

GO term	Ontology	Name
GO:0006542	biological_process	glutamine biosynthetic process
GO:0006807	biological_process	nitrogen compound metabolic process
GO:0004356	molecular_function	glutamate-ammonia ligase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.329
	SRR3591706	second leaf	39.203
	SRR3591707	mature leaf	37.266
	SRR3591708	Shoot apex	42.000
	SRR3591709	Stem	12.131
	SRR3591710	White floral bud	110.658
	SRR3591711	White flower	71.313
	SRR3591712	Green floral bud	148.419
	SRR3591713	Yellow flower	26.738
SRP173429	SRR8316895	Juvenile bud stage	20.080
	SRR8316896	Juvenile bud stage	36.204
	SRR8316897	Juvenile bud stage	13.389
	SRR8316894	Third green stage	12.208
	SRR8316900	Third green stage	41.899
	SRR8316901	Third green stage	42.539
	SRR8316898	Complete white stage	8.785
	SRR8316899	Complete white stage	60.939
	SRR8316903	Complete white stage	12.825
	SRR8316902	Silver flowering stage	3.253
	SRR8316904	Silver flowering stage	1.950
	SRR8316905	Silver flowering stage	0.846
	SRR8316906	Gold flowering stage	6.832
	SRR8316907	Gold flowering stage	2.694
	SRR8316908	Gold flowering stage	14.196
SRP132670	SRR6706286	Control	36.639
	SRR6706287	Light intensity 50%	39.945
	SRR6706288	Light intensity 20%	51.362
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.508
	CNS0095593	Slightly white alabastrum(diploid) 2	30.036
	CNS0095594	Slightly white alabastrum(diploid) 3	23.597
	CNS0095595	Whole white alabastrum(diploid) 2	24.282
	CNS0095596	Whole white alabastrum(diploid) 3	20.106
	CNS0095597	Whole white alabastrum(diploid) 4	19.657
	CNS0095598	Silvery flower (diploied) 1	15.344
	CNS0095599	Silvery flower (diploied) 2	7.951
	CNS0095600	Silvery flower (diploied) 3	7.822
	CNS0095601	Golden flower (diploid) 1	6.675
	CNS0095602	Golden flower (diploid) 2	4.319
	CNS0095603	Golden flower (diploid) 3	4.926
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.883
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.416
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.872
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.049
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.674
	CNS0095610	Silvery flower (tetraploid) 1	2.288
	CNS0095611	Silvery flower (tetraploid) 2	1.620
	CNS0095612	Silvery flower (tetraploid) 3	1.843
	CNS0095613	Golden flower (tetraploid) 1	2.642
	CNS0095614	Golden flower (tetraploid) 2	1.202
	CNS0095615	Golden flower (tetraploid) 3	1.466
CRA001975	CRR073297	Stem 1	50.918
	CRR073298	Stem 2	55.801
	CRR073299	Stem 3	48.807
	CRR073300	Leaf 1	86.168
	CRR073301	Leaf 2	74.891
	CRR073302	Leaf 3	88.871
	CRR073303	Juvenile bud 1	66.328
	CRR073304	Juvenile bud 2	70.596
	CRR073305	Juvenile bud 3	66.989
	CRR073306	Third green 1	9.788
	CRR073307	Third green 2	3.086
	CRR073308	Third green 3	4.409
	CRR073309	Second white 1	3.393
	CRR073310	Second white 2	3.979
	CRR073311	Second white 3	2.318
	CRR073312	Silver flowering 1	2.380
	CRR073313	Silver flowering 2	2.922
	CRR073314	Silver flowering 3	1.505
	CRR073315	Gold flowering 1	32.082
	CRR073316	Gold flowering 2	20.018
	CRR073317	Gold flowering 3	34.921
	CRR073318	Tawny withering 1	24.417
	CRR073319	Tawny withering 2	38.843
	CRR073320	Tawny withering 3	2.946