Gene detail

Detail information of GWHGAAZE022360

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFJ44312.1	0	chalcone synthase [Lonicera japonica]
COG	YP_004652342.1	4E-44	hypothetical protein PUV_15380
Swissprot	tr\|P22928\|CHSJ_PETHY	0	Chalcone synthase J
trEMBL	tr\|I2B1K6\|I2B1K6_LONJA	0	Chalcone synthase {ECO:0000313\|EMBL:AFJ44312.1}
TAIR10	AT5G13930.1	0	Chalcone and stilbene synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71201281	71202560	-
GWHAAZE00000006	mRNA	71201281	71202560	-
GWHAAZE00000006	exon	71201281	71202272	-
GWHAAZE00000006	exon	71202383	71202560	-
GWHAAZE00000006	CDS	71202383	71202560	-
GWHAAZE00000006	CDS	71201281	71202272	-

Transcript Sequence
>GWHTAAZE022390 ATGGTTACTGTCGAGGAGGTTCGTAATGCTCAACGCGCCCAAGGCCCTGCAACCGTCATGGCCATTGGTACTGCGACTCCTGCCAACTGCGTCGACCAAAGCGATTACCCCGATTTCTACTTTCGTATCACTAACAGTGAACACAGGACTGAGCTCAAAGAAAAATTCAAGCGCATGTGCGAGAAATCTACAATCAAGAAGCGTTACATGCACTTGACAGAGGAAATCTTGAAAGAACAACCGGATATGTGCGCGTACATGGCACCTTCTCTAGATGCTAGGCAAGATATTGTGGTGGTAGAAGTACCGAAACTTGGAAAAGAAGCGGCAACAAAGGCGATCAAGGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTAGTCTTTTGCACTACTAGTGGTGTTGACATGCCCGGTGCGGACTACCAGCTCACCAAGCTCCTCGGCCTACGCTCTTCGGTCAAGCGCCTCATGATGTACCAACAGGGTTGCTTTGCTGGCGGCACGGTTCTTCGTCTAGCCAAGGACCTAGCCGAGAACAACAAAGGTGCTCGCGTGCTTGTTGTTTGCTCCGAGATCACCGCGGTCACATTCCGTGGGCCTAGTGATACGCACCTTGACAGCCTTGTGGGTCAGGCCTTGTTTGGTGATGGTGCAGCCGCTATGATCATTGGTTCGGACCCAATGCCCGAGGTCGAGAAGCCGTTATTTGAGCTAGTTTCAGCATCACAGACCATTCTACCAGATAGTGATGGGGCTATTGATGGACACCTACGTGAAGTTGGGCTAACGTTTCACCTTCTCAAGGACGTACCCGGGCTAATATCAAAGAACATAGAGAAGAGCCTTGTGGAGGCATTCAAGCCTTTGGGTATATCGGATTGGAACTCGATCTTTTGGATTGCTCATCCGGGTGGACCGGCTATTTTGGACCAAGTGGAAAAGAAGTTGGCCCTTAAGCCTGAGAAGATGGGAGCTACAAGGCATGTGCTTAGCGAGTATGGAAATATGTCTAGTGCTTGTGTGCTGTTTATAATGGATGAGATGAGGAAGAAATCGGCCAACGAGGGGCTTAAGACCACCGGAGAGGGGCTCGAATGGGGTGTGCTCTTTGGGTTCGGACCAGGGCTCACCGTTGAGACTGTTGTTCTCCATAGTGTGTCCACTTAG

Network for GWHGAAZE022360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00195.20	Chal_sti_synt_N	5	228	2.00E-124
PF02797.16	Chal_sti_synt_C	238	387	2.00E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00660	CHS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.908
	SRR3591706	second leaf	22.653
	SRR3591707	mature leaf	1.778
	SRR3591708	Shoot apex	21.299
	SRR3591709	Stem	11.532
	SRR3591710	White floral bud	1.161
	SRR3591711	White flower	0.643
	SRR3591712	Green floral bud	0.510
	SRR3591713	Yellow flower	0.023
SRP173429	SRR8316895	Juvenile bud stage	3.264
	SRR8316896	Juvenile bud stage	3.049
	SRR8316897	Juvenile bud stage	1.797
	SRR8316894	Third green stage	0.688
	SRR8316900	Third green stage	1.219
	SRR8316901	Third green stage	1.310
	SRR8316898	Complete white stage	0.605
	SRR8316899	Complete white stage	1.746
	SRR8316903	Complete white stage	1.336
	SRR8316902	Silver flowering stage	0.563
	SRR8316904	Silver flowering stage	0.477
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.414
	SRR8316907	Gold flowering stage	0.242
	SRR8316908	Gold flowering stage	3.088
SRP132670	SRR6706286	Control	0.467
	SRR6706287	Light intensity 50%	0.459
	SRR6706288	Light intensity 20%	0.573
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.431
	CNS0095593	Slightly white alabastrum(diploid) 2	0.254
	CNS0095594	Slightly white alabastrum(diploid) 3	5.110
	CNS0095595	Whole white alabastrum(diploid) 2	0.286
	CNS0095596	Whole white alabastrum(diploid) 3	0.166
	CNS0095597	Whole white alabastrum(diploid) 4	0.194
	CNS0095598	Silvery flower (diploied) 1	0.331
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.327
	CNS0095601	Golden flower (diploid) 1	0.392
	CNS0095602	Golden flower (diploid) 2	0.024
	CNS0095603	Golden flower (diploid) 3	0.041
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.878
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.658
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.216
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.295
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.647
	CNS0095610	Silvery flower (tetraploid) 1	2.181
	CNS0095611	Silvery flower (tetraploid) 2	0.089
	CNS0095612	Silvery flower (tetraploid) 3	0.186
	CNS0095613	Golden flower (tetraploid) 1	0.020
	CNS0095614	Golden flower (tetraploid) 2	1.848
	CNS0095615	Golden flower (tetraploid) 3	0.022
CRA001975	CRR073297	Stem 1	3.915
	CRR073298	Stem 2	3.285
	CRR073299	Stem 3	2.532
	CRR073300	Leaf 1	0.805
	CRR073301	Leaf 2	0.938
	CRR073302	Leaf 3	0.853
	CRR073303	Juvenile bud 1	0.652
	CRR073304	Juvenile bud 2	0.530
	CRR073305	Juvenile bud 3	0.976
	CRR073306	Third green 1	0.018
	CRR073307	Third green 2	0.165
	CRR073308	Third green 3	1.079
	CRR073309	Second white 1	0.070
	CRR073310	Second white 2	1.983
	CRR073311	Second white 3	0.336
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.943
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	55.028
	CRR073316	Gold flowering 2	36.480
	CRR073317	Gold flowering 3	20.705
	CRR073318	Tawny withering 1	0.198
	CRR073319	Tawny withering 2	1.760
	CRR073320	Tawny withering 3	0.227