Gene detail

Detail information of GWHGAAZE022340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP18453.1	6.9019E-156	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	2E-58	Transcription factor DIVARICATA
trEMBL	tr\|A0A068VFI4\|A0A068VFI4_COFCA	3E-156	Coffea canephora DH200=94 genomic scaffold, scaffold_237 {ECO:0000313\|EMBL:CDP18453.1}
TAIR10	AT5G08520.1	4E-74	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70757043	70759586	+
GWHAAZE00000006	mRNA	70757043	70759586	+
GWHAAZE00000006	exon	70757043	70757434	+
GWHAAZE00000006	exon	70759085	70759586	+
GWHAAZE00000006	CDS	70757043	70757434	+
GWHAAZE00000006	CDS	70759085	70759586	+

Transcript Sequence
>GWHTAAZE022370 ATGGCATCTGATGGATCAGGGAGTAGTTCCATATGGAGCAGAGATGATGACAAGGCATTTGAGAATGCTCTGGCAACTTATCCCGAGGACTCTGTAGATCGGTGGGAGAACATTTTGGCAGATGTTCCAGGGAAATCCTTAGAAGAGATTAAACATCACTACGATCTCTTAGTTGATGATGTTGACAGGATCGAATCTGGATTGGTGCCTCTGCCTTGCTATAAATCTTCTTCAGATAGATCGGCAAATGCGAATCATGTGGATGATGAAGGGACTGGTAAGAAAGGTGGAAGTTCGGGCCACTTGAACAGTGATTCCAATCATGGAGGTAAGGGTTCAAGGTCAGATCAGGAGCGTCGCAAAGGAATTGCTTGGACAGAGGAGGAGCACAAATTATTTCTTCTGGGTTTGGACAAATATGGGAAAGGTGATTGGAGGAGTATATCCCGGAACTTTGTGAAGACGAGGACGCCTACTCAAGTGGCGAGCCACGCACAAAAGTACTTCAATCGTTTAAACTCTACCAACAAAGATAGGAGGCGATCTAGCATTCATGACATCACCAGCGTCGAGGGCGGTGACATATCGGTGCCTCAAGTACCAATCACAGGTCAGACAACAAATGGTTCTTCTGCAGCAGGAGGAGGTTCATCGGGAAAATCAGGCAAACAATCCCCTCAAGCTCCTCCTGCACCGTCAGCAGTTGGCATGTATGGCGGAACTACTATAGGTCAACCGGTAGGTGGACCCCTTGTTTCAGCAGTTGGAACACCTGTGAATCTACCTCCACAAGCACACATGGCTTTTGGCGTGCGGGCCCCTGTTCCAGGATCGGTGGTACCCGGTGCACCGATGAATATGTACCCGATGGCTCACCCATCTGCTCATAGGTAA

Network for GWHGAAZE022340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	124	168	4.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.084
	SRR3591706	second leaf	8.863
	SRR3591707	mature leaf	9.672
	SRR3591708	Shoot apex	16.926
	SRR3591709	Stem	22.687
	SRR3591710	White floral bud	16.326
	SRR3591711	White flower	10.755
	SRR3591712	Green floral bud	15.752
	SRR3591713	Yellow flower	6.499
SRP173429	SRR8316895	Juvenile bud stage	9.582
	SRR8316896	Juvenile bud stage	10.973
	SRR8316897	Juvenile bud stage	6.492
	SRR8316894	Third green stage	5.161
	SRR8316900	Third green stage	9.931
	SRR8316901	Third green stage	11.339
	SRR8316898	Complete white stage	5.284
	SRR8316899	Complete white stage	17.418
	SRR8316903	Complete white stage	7.027
	SRR8316902	Silver flowering stage	2.800
	SRR8316904	Silver flowering stage	4.173
	SRR8316905	Silver flowering stage	1.685
	SRR8316906	Gold flowering stage	5.791
	SRR8316907	Gold flowering stage	5.526
	SRR8316908	Gold flowering stage	7.327
SRP132670	SRR6706286	Control	9.090
	SRR6706287	Light intensity 50%	10.618
	SRR6706288	Light intensity 20%	11.133
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.283
	CNS0095593	Slightly white alabastrum(diploid) 2	10.817
	CNS0095594	Slightly white alabastrum(diploid) 3	9.588
	CNS0095595	Whole white alabastrum(diploid) 2	9.963
	CNS0095596	Whole white alabastrum(diploid) 3	6.250
	CNS0095597	Whole white alabastrum(diploid) 4	7.435
	CNS0095598	Silvery flower (diploied) 1	15.210
	CNS0095599	Silvery flower (diploied) 2	11.830
	CNS0095600	Silvery flower (diploied) 3	7.465
	CNS0095601	Golden flower (diploid) 1	11.666
	CNS0095602	Golden flower (diploid) 2	9.324
	CNS0095603	Golden flower (diploid) 3	9.790
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.410
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.579
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.140
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.899
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.100
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.836
	CNS0095610	Silvery flower (tetraploid) 1	6.898
	CNS0095611	Silvery flower (tetraploid) 2	8.510
	CNS0095612	Silvery flower (tetraploid) 3	12.061
	CNS0095613	Golden flower (tetraploid) 1	3.781
	CNS0095614	Golden flower (tetraploid) 2	6.317
	CNS0095615	Golden flower (tetraploid) 3	4.629
CRA001975	CRR073297	Stem 1	29.395
	CRR073298	Stem 2	30.598
	CRR073299	Stem 3	29.784
	CRR073300	Leaf 1	28.373
	CRR073301	Leaf 2	32.695
	CRR073302	Leaf 3	26.501
	CRR073303	Juvenile bud 1	20.652
	CRR073304	Juvenile bud 2	19.453
	CRR073305	Juvenile bud 3	31.818
	CRR073306	Third green 1	9.331
	CRR073307	Third green 2	7.741
	CRR073308	Third green 3	11.446
	CRR073309	Second white 1	7.554
	CRR073310	Second white 2	5.348
	CRR073311	Second white 3	4.377
	CRR073312	Silver flowering 1	3.044
	CRR073313	Silver flowering 2	2.410
	CRR073314	Silver flowering 3	1.405
	CRR073315	Gold flowering 1	19.277
	CRR073316	Gold flowering 2	25.936
	CRR073317	Gold flowering 3	22.120
	CRR073318	Tawny withering 1	30.593
	CRR073319	Tawny withering 2	16.492
	CRR073320	Tawny withering 3	27.302