Gene detail

Detail information of GWHGAAZE022282

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14144.1	0	unnamed protein product [Coffea canephora]
COG	YP_003776964.1	6E-85	ATP-dependent RNA helicase
Swissprot	tr\|Q9SQV1\|RH40_ARATH	0	DEAD-box ATP-dependent RNA helicase 40
trEMBL	tr\|A0A068V0W9\|A0A068V0W9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_80 {ECO:0000313\|EMBL:CDP14144.1}
TAIR10	AT3G06480.1	0	DEAD box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69861617	69867909	-
GWHAAZE00000006	mRNA	69861617	69867909	-
GWHAAZE00000006	exon	69861617	69862754	-
GWHAAZE00000006	exon	69862902	69863227	-
GWHAAZE00000006	exon	69863566	69863916	-
GWHAAZE00000006	exon	69864025	69864294	-
GWHAAZE00000006	exon	69864448	69864504	-
GWHAAZE00000006	exon	69864590	69864696	-
GWHAAZE00000006	exon	69864829	69864901	-
GWHAAZE00000006	exon	69866415	69866624	-
GWHAAZE00000006	exon	69866779	69867909	-
GWHAAZE00000006	CDS	69866779	69867909	-
GWHAAZE00000006	CDS	69866415	69866624	-
GWHAAZE00000006	CDS	69864829	69864901	-
GWHAAZE00000006	CDS	69864590	69864696	-
GWHAAZE00000006	CDS	69864448	69864504	-
GWHAAZE00000006	CDS	69864025	69864294	-
GWHAAZE00000006	CDS	69863566	69863916	-
GWHAAZE00000006	CDS	69862902	69863227	-
GWHAAZE00000006	CDS	69861617	69862754	-

Transcript Sequence
>GWHTAAZE022312 ATGGCGACTGCTGAGGCAGCACCAGCTTCGCTTGGTCCCCGTTATGCTCCTGATGATCCAACTCTGCCCCAACCGTGGAAAGGTTTAATTGATGGAACAACAGGTCTTTTATACTACTGGAATCCTGAAACAAACATCACCCAGTATGAAAAACCTACTGCTTTGCCCCCACCATTGCCACAAGGCCCTCCTTCTGTGACACCTACACCTAAGCTGGCTCCAATACCTGGTGGTGCTCGAGTGTTGCAACCTAATGGAGTTCCAGGACTGCATGGGGAACAAATGACACAAACCCCACAACAACAGGCTCAACAGATGACCCCCTCTTCTCAACAGCATGCACAGCAAATGCTGCAGGTGGCTCAACAGGGATCACAAGCTGGACCGGCTGTGCAGCAACCGGGTCAGTTAACACCACAACACCTAAGACCACAAATGATGCACCAGCCAAATCAGCAAATGTTTCCGCTGCCAGAACATCAAGTTGGAGCAGCACAGATGTATCAAGGCACACAAATGGGACCACCACAGGCTTATCAATTTACGCATCAACACATGCAGCACATGGCATATCAGCAGAATATGCCTCAACAAGGGCAGCAAAGTTCACTGCAGCAGACTCAACATACGCTGGGGCAACAGTTTTCCCATCAACAAGATCATAATAAATCAGGATTCTTACAGAGAGAAGATGCTGACTTCCAACATGGTCACCAAATTGGCTTTTCTCCATCACAGGTTCAACAAGCTGGTGTGTCATCTTTTCAAAATCCACCTGCTGGAACCAATTCTGCTCAGATGCCACAGGTGGGTGTTCAACCTGGTCAAACTACACAGTTTGGTGGGGGTTCAGTCAATATGCAACAGCTCATGCCTTTTGTCCAATCGCTGCAAAGTGGGGCAGATGTAAGTCAGCAGCAACGTGGCCCTATGTTTCAGAATCAAATAAGTCCTGGGCTGATGCATGGGCACCAGTCCAATGTTCCATCCGTTGGAGTAAAGTCGGGGTATGATGAAAATACACAAGGAAGAGCTAGGAATGATTACTATTTTAATGCGAACAAGGATGGGTCCGTAGGGGTTACTCAGCAACCTAAGCTTGCAACGATTCCTATGGCAAGAAATCAGCAGGAGTTGAGGATGGGTAATCTTTCTTCCCAAGCTTCATCTGGGCATCCTGTTGCAGGCCCTCCCATGCATAGCAATTATAGTCATGCAGCTGGCGGTCCGCCATTTCCAAATAATGCTCTGGGGAGGCCTCCAGTGATAATGGGATCTCCAGATGATATTAATCACTCTCCTGCTGAAGTTTACAGACAAAAGCATGAAGTAACAGCAGCGGGTGAGAACGTTCCTGATCCATTCATGTCATTTGAAGCTACTGGCTTTCCTCCAGAGATATTGAGAGAGGTAAGTGCGATATCTGCTCCATTGGAGGAGCATATGTCGTACGCTGCACTGCTATGCGCATATACTTACGCAACAGCTATATCTGAGTTTTGGAGGCTGCAAAAATGGACACTTATTGGCTCCGCCTTCTGTCTTAGTTTCTCCTTTTTGTTGCCTCGAGTTGCTTCAATTCATTCTGCTGGTTTCACTTCTCCCACCCCGATTCAGGCGCAAACATGGCCAATTGCACTCCAAAACAGAGACATAGTTGCTATTGCCAAGACAGGATCTGGTAAAACATTAGGCTATTTGATCCCTGCCTTCATGCTCCTCAGGCACTGTCGAAACAATCCTTTGAATGGCCCAACTGTGGTAATTTTAGCTCCAACCAGAGAGCTTGCCACACAAATACAAGATGAGGTTGTCAAGTTTGGGCGATCTTCTAGAGTATCTTGCACGTGCTTGTATGGTGGAGCTCCTAAGGCCATTCAGTTAAAAGAACTCGATCGAGGAGCAGATATTGTTGTAGCAACACCTGGTCGGCTAAACGACATCCTTGAAATGAAAAAAGTTGATTTTCGGCAAGTTTCTCTGCTTGTGCTTGATGAGGCTGATAGAATGCTTGACATGGGTTTTGAACCTCAAATTCGGAAGATTGTGAATGAGATACCTCCACGCAGGCAAACTCTGATGTATACAGCGACCTGGCCCAAAGAAGTGAGAAAGATAGCTGGGGATCTACTCGTTAATCCTGTTCAGGTGAACATTGGCAATGTCGACGAGCTTGAAGCAAATAAATCCATCACTCAGCACATCGAAGTTATCCCTCAAATGGCAAAGGACAGACGCTTGGAGCAGATACTCAGGTCCCAAGAACGGGGTTCTAAGATTATTATTTTCTGTTCCACTAAAAGATTGTGTGACCAGCTTGCACGCACTATTGGTCGTAGTTTTGGTGCTGCTGCAATCCATGGGGACAAGAATCAGAGTGAAAGAGACTGGGTTCTGAATCAATTCCGCACCGGAAAGTCCCCAATTTTAGTTGCCACTGATGTTGCCGCCCGTGGTCTTGACATAAAAGATATAAGGCAGGACTTTATTTCCCCCTCTTTTTTTTCTTTTTTTTTTTGGTTATATTGCTTTTGGTCCTTTTACAGGATAGTTGTGAATTATGATTTTCCAACCGGAGTTGAGGATTATGTCCACCGAATTGGACGAACCGGGAGGGCGGGGGCCACAGGGGTGGCGTACACTTTCTTTTGTGAGCAGGACTGGAAATATGCAGCTGATCTGATAAAAGTTCTGGAGGGGGCTAACCAGCTTGTACCCAACGAGCTGCGAGAGATGGCTTTGCGTGGGGGTCCCAGTTTTAGCAAGGATCGGGGTGGGACAACCCGTTTTGATTCTGGCACCGATGGTGGTGATCGTTGGGATTCTGGTGGCCGCAGCGGTGGTAGAGATGCAGGCTTTGGTGGCCGCGGTGGAATGAGGGAAGCAGGCTTTGGTGGCCGCGGTGGAATGAGGGATGTGAACTTTGGCAGCCGTGGTGGAATGAGGGATGGCGGCTTTGGCGGCCGTGGTGGAATGAGGGATGGCAGCTTTGGCGGCCGCAGTGACATGAGGGATGGCGGCCGCGGTGGCACGAGGGATGGCGGCTTTGGTGGCCGTGGTGGTATGAGGGATGGAGGCAATAGTGGTCGTGGCGGCCCAAGGAGTGGTGGATATGGTGGTAACATCGGTTGGGACAGGAATGAACGTGGTGGCCAACATGATAGGTACAGCAGTATGGATACGCGTGGACGGGGCAGGGGCCGAGGGCGAGGACGATTTGATAACAGAAGAGACGGTGGAGATCGGAGTAGAGGCAGAAGTTATAGCTCCAGTCCTGAAAGAGTTCGAACATGGGGTGGTTATAGTAGAAGCCGAAGCTGTAGCCGGAGTTATAGTCATAGCCGGAGCCGTAGCCGTAGTTATAGCCGTAGCCGTAGCCGTAGCCGTAGCTGGTCACGTAGCCGTAGCCCTAGGCGAAGCCGCAGCCCCACGCCTACCAGACGTGTAAGACGCCGTGAGTCTAAATTTGATCAAATGGATGCTACGGTGCCACCAGTTGCAGTTCCTCCTGAATCCGGTATTCCACTTGCATCTCCTGCCGTAGTATGCAACATGTTTCCTGGAGCTGATCCACCTGTGAACCAGTTACCTTTAGTGGAGAGTAGCGATCCAGGGCACCCAGAGACCCCGGCAGAACCAAGCAATCCAGTTCCTGAACCTTAA

Network for GWHGAAZE022282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00397.27	WW	22	52	2.80E-06
PF00270.30	DEAD	536	706	5.00E-49
PF00271.32	Helicase_C	743	826	9.80E-18
PF00271.32	Helicase_C	850	874	1.50E-05

Protein Sequence

>GWHPAAZE022298
MATAEAAPASLGPRYAPDDPTLPQPWKGLIDGTTGLLYYWNPETNITQYEKPTALPPPLPQGPPSVTPTPKLAPIPGGARVLQPNGVPGLHGEQMTQTPQQQAQQMTPSSQQHAQQMLQVAQQGSQAGPAVQQPGQLTPQHLRPQMMHQPNQQMFPLPEHQVGAAQMYQGTQMGPPQAYQFTHQHMQHMAYQQNMPQQGQQSSLQQTQHTLGQQFSHQQDHNKSGFLQREDADFQHGHQIGFSPSQVQQAGVSSFQNPPAGTNSAQMPQVGVQPGQTTQFGGGSVNMQQLMPFVQSLQSGADVSQQQRGPMFQNQISPGLMHGHQSNVPSVGVKSGYDENTQGRARNDYYFNANKDGSVGVTQQPKLATIPMARNQQELRMGNLSSQASSGHPVAGPPMHSNYSHAAGGPPFPNNALGRPPVIMGSPDDINHSPAEVYRQKHEVTAAGENVPDPFMSFEATGFPPEILREVSAISAPLEEHMSYAALLCAYTYATAISEFWRLQKWTLIGSAFCLSFSFLLPRVASIHSAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLGYLIPAFMLLRHCRNNPLNGPTVVILAPTRELATQIQDEVVKFGRSSRVSCTCLYGGAPKAIQLKELDRGADIVVATPGRLNDILEMKKVDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELEANKSITQHIEVIPQMAKDRRLEQILRSQERGSKIIIFCSTKRLCDQLARTIGRSFGAAAIHGDKNQSERDWVLNQFRTGKSPILVATDVAARGLDIKDIRQDFISPSFFSFFFWLYCFWSFYRIVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCEQDWKYAADLIKVLEGANQLVPNELREMALRGGPSFSKDRGGTTRFDSGTDGGDRWDSGGRSGGRDAGFGGRGGMREAGFGGRGGMRDVNFGSRGGMRDGGFGGRGGMRDGSFGGRSDMRDGGRGGTRDGGFGGRGGMRDGGNSGRGGPRSGGYGGNIGWDRNERGGQHDRYSSMDTRGRGRGRGRGRFDNRRDGGDRSRGRSYSSSPERVRTWGGYSRSRSCSRSYSHSRSRSRSYSRSRSRSRSWSRSRSPRRSRSPTPTRRVRRRESKFDQMDATVPPVAVPPESGIPLASPAVVCNMFPGADPPVNQLPLVESSDPGHPETPAEPSNPVPEP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.576
	SRR3591706	second leaf	20.574
	SRR3591707	mature leaf	21.914
	SRR3591708	Shoot apex	27.518
	SRR3591709	Stem	28.239
	SRR3591710	White floral bud	33.688
	SRR3591711	White flower	39.487
	SRR3591712	Green floral bud	29.972
	SRR3591713	Yellow flower	30.742
SRP173429	SRR8316895	Juvenile bud stage	16.116
	SRR8316896	Juvenile bud stage	19.728
	SRR8316897	Juvenile bud stage	8.568
	SRR8316894	Third green stage	9.490
	SRR8316900	Third green stage	22.092
	SRR8316901	Third green stage	24.528
	SRR8316898	Complete white stage	7.704
	SRR8316899	Complete white stage	30.065
	SRR8316903	Complete white stage	17.475
	SRR8316902	Silver flowering stage	10.398
	SRR8316904	Silver flowering stage	13.159
	SRR8316905	Silver flowering stage	6.312
	SRR8316906	Gold flowering stage	23.310
	SRR8316907	Gold flowering stage	22.819
	SRR8316908	Gold flowering stage	22.576
SRP132670	SRR6706286	Control	39.039
	SRR6706287	Light intensity 50%	38.980
	SRR6706288	Light intensity 20%	39.275
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.059
	CNS0095593	Slightly white alabastrum(diploid) 2	17.549
	CNS0095594	Slightly white alabastrum(diploid) 3	15.722
	CNS0095595	Whole white alabastrum(diploid) 2	14.219
	CNS0095596	Whole white alabastrum(diploid) 3	11.018
	CNS0095597	Whole white alabastrum(diploid) 4	13.037
	CNS0095598	Silvery flower (diploied) 1	21.483
	CNS0095599	Silvery flower (diploied) 2	18.583
	CNS0095600	Silvery flower (diploied) 3	30.472
	CNS0095601	Golden flower (diploid) 1	19.454
	CNS0095602	Golden flower (diploid) 2	32.721
	CNS0095603	Golden flower (diploid) 3	33.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.056
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.099
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.319
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.893
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.956
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.973
	CNS0095610	Silvery flower (tetraploid) 1	30.576
	CNS0095611	Silvery flower (tetraploid) 2	25.642
	CNS0095612	Silvery flower (tetraploid) 3	26.146
	CNS0095613	Golden flower (tetraploid) 1	15.879
	CNS0095614	Golden flower (tetraploid) 2	29.017
	CNS0095615	Golden flower (tetraploid) 3	31.758
CRA001975	CRR073297	Stem 1	32.485
	CRR073298	Stem 2	29.386
	CRR073299	Stem 3	22.718
	CRR073300	Leaf 1	30.628
	CRR073301	Leaf 2	28.196
	CRR073302	Leaf 3	17.642
	CRR073303	Juvenile bud 1	19.066
	CRR073304	Juvenile bud 2	12.832
	CRR073305	Juvenile bud 3	31.446
	CRR073306	Third green 1	10.928
	CRR073307	Third green 2	7.969
	CRR073308	Third green 3	10.945
	CRR073309	Second white 1	9.527
	CRR073310	Second white 2	13.408
	CRR073311	Second white 3	13.356
	CRR073312	Silver flowering 1	14.532
	CRR073313	Silver flowering 2	16.014
	CRR073314	Silver flowering 3	14.855
	CRR073315	Gold flowering 1	10.156
	CRR073316	Gold flowering 2	17.770
	CRR073317	Gold flowering 3	13.028
	CRR073318	Tawny withering 1	18.737
	CRR073319	Tawny withering 2	15.873
	CRR073320	Tawny withering 3	16.460