Gene detail

Detail information of GWHGAAZE022256

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011019625.1	2.4523E-172	PREDICTED: peroxidase 40-like [Populus euphratica]
Swissprot	tr\|O23474\|PER40_ARATH	3E-138	Peroxidase 40 (Precursor)
trEMBL	tr\|W8Q496\|W8Q496_POPTR	9E-172	Class III peroxidase {ECO:0000313\|EMBL:AHL39159.1}
TAIR10	AT4G16270.1	1E-106	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	69317030	69318600	+
GWHAAZE00000006	mRNA	69317030	69318600	+
GWHAAZE00000006	exon	69317030	69317288	+
GWHAAZE00000006	exon	69317395	69317570	+
GWHAAZE00000006	exon	69317701	69317866	+
GWHAAZE00000006	exon	69317956	69318600	+
GWHAAZE00000006	CDS	69317030	69317288	+
GWHAAZE00000006	CDS	69317395	69317570	+
GWHAAZE00000006	CDS	69317701	69317866	+
GWHAAZE00000006	CDS	69317956	69318362	+
GWHAAZE00000006	three_prime_UTR	69318363	69318600	+

Transcript Sequence
>GWHTAAZE022284 ATGGCCATGCACTTAACTTTCTACTTACTCCTCATCAACCTTTCATCATTCTCATTTGCCACCAACACTGCTAACATATCGAATGAGGCATGTGTAGATGTTGGCGCCACTATCATACTGCAGTTTGGCGTGTACCAAGACAGTTGCCCCCAAGCAGAGCCCATCATCTTCTCTTGGGTTCAAAAGGCCGTCTCAGAGGACCCTCGAATGGCTGCTTCTTTACTTCGCCTCCATTTTCATGATTGCTTTGTCAATGCAATGTTATTGGATGACACACCAAATTTTGTCGGAGAAAAAACCGCAGCCCCAAACTTGAACTCTTTGAGAGGGTTTGAAGTGATCGACGCCATAAAGTCCGACCTTGAGGCTACTTGCCCTGAAATCGTGTCTTGTGCTGATATTCTTGCTATTGCAGCCAGAGACTCAGTCGTCTTGTCAGGTGGGCCTGGATGGGAAGTACAGATGGGTAGAAAGGACAGCTTAACTGCTAGCCAAGCCGCAGCCAATAACAACATTCCAGCCCCTAATTCTGACGTGGCGACACTAGTTTCCAAGTTCCAAAACGTAGGCCTTGACCTCAATGACATGGTCGCGCTATCTGGTGCACACACGCTTGGAAAAGCTCGGTGCTCAACATTCAGCTCTAGGTTAAACAACCCAAGCGGTGGTCCAAATGTCCTAGACATTAACCTAGACTTCCTCCAGTCACTGCAGCAAATTTGTGCCGATGGGAACACGACTCTGGCACATCTTGACCTAGTAACACCATCAACATTCGATAATCAGTATTATATTAACCTTCTTTCTGGCGAGGGATTGCTTCCATCGGACCAGGTTTTAGTGACTGGAAATGAAGAGACGCGTGAGATTGTTGAATCCTATGTTGATGATGCAATCATATTCTATGAAGAATTTAAAAGGTCGATGCTGAGAATGGGGAGCCTGGGGCCAATGACGGGGGAGAACGGTGAAATACGTAGGAGCTGTAGGGTTATCAATCAGGTTTAGGTACCTTACACTCTTATGATCTGCATAATAACTTGTAGCTTTGTTTAGTAGTAAGATTTAACAATAAATGTTAGTTAGCAGTTGGAGAAATTTATGCAAGCTGATTATGTTATTTAAGTGGGCCTTCGGAGTGTTTGCGGCCACCACAACTATATTACCTCGTACTAATCTAAATCAATGTAATAGCTCTCGGATCGCTCATTTTTATTCGTCTATTAATTAGCTTTCAAAGGAGCAA

Network for GWHGAAZE022256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	60	296	1.80E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.217
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.085
	SRR3591709	Stem	1.024
	SRR3591710	White floral bud	0.106
	SRR3591711	White flower	0.008
	SRR3591712	Green floral bud	0.633
	SRR3591713	Yellow flower	0.624
SRP173429	SRR8316895	Juvenile bud stage	4.967
	SRR8316896	Juvenile bud stage	2.453
	SRR8316897	Juvenile bud stage	0.901
	SRR8316894	Third green stage	0.255
	SRR8316900	Third green stage	0.058
	SRR8316901	Third green stage	0.161
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.051
	SRR8316903	Complete white stage	0.233
	SRR8316902	Silver flowering stage	0.047
	SRR8316904	Silver flowering stage	0.028
	SRR8316905	Silver flowering stage	0.073
	SRR8316906	Gold flowering stage	0.283
	SRR8316907	Gold flowering stage	0.213
	SRR8316908	Gold flowering stage	0.281
SRP132670	SRR6706286	Control	0.394
	SRR6706287	Light intensity 50%	0.233
	SRR6706288	Light intensity 20%	0.169
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.490
	CNS0095593	Slightly white alabastrum(diploid) 2	0.292
	CNS0095594	Slightly white alabastrum(diploid) 3	1.420
	CNS0095595	Whole white alabastrum(diploid) 2	0.055
	CNS0095596	Whole white alabastrum(diploid) 3	0.012
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.039
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.030
	CNS0095601	Golden flower (diploid) 1	0.106
	CNS0095602	Golden flower (diploid) 2	0.225
	CNS0095603	Golden flower (diploid) 3	0.169
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.036
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.038
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.198
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.091
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.116
	CNS0095613	Golden flower (tetraploid) 1	0.077
	CNS0095614	Golden flower (tetraploid) 2	0.081
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	18.611
	CRR073298	Stem 2	8.226
	CRR073299	Stem 3	31.669
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.035
	CRR073303	Juvenile bud 1	0.003
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.128
	CRR073309	Second white 1	0.032
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.005
	CRR073314	Silver flowering 3	0.148
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.187
	CRR073317	Gold flowering 3	0.156
	CRR073318	Tawny withering 1	0.949
	CRR073319	Tawny withering 2	0.515
	CRR073320	Tawny withering 3	0.561