Gene detail

Detail information of GWHGAAZE022220

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002272118.2	PREDICTED: calmodulin-binding transcription activator 6 isoform X1 [Vitis vinifera]
Swissprot	tr\|O23463\|CMTA5_ARATH	Calmodulin-binding transcription activator 5
trEMBL	tr\|D7SY49\|D7SY49_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22906.3}
TAIR10	AT3G16940.1	calmodulin binding;transcription regulators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	68829331	68839508	+
GWHAAZE00000006	mRNA	68829331	68839508	+
GWHAAZE00000006	exon	68829331	68829385	+
GWHAAZE00000006	exon	68829559	68829684	+
GWHAAZE00000006	exon	68829851	68829966	+
GWHAAZE00000006	exon	68830843	68830931	+
GWHAAZE00000006	exon	68831100	68831145	+
GWHAAZE00000006	exon	68831940	68832078	+
GWHAAZE00000006	exon	68832693	68832806	+
GWHAAZE00000006	exon	68832909	68832967	+
GWHAAZE00000006	exon	68833984	68834415	+
GWHAAZE00000006	exon	68835485	68836182	+
GWHAAZE00000006	exon	68836880	68837426	+
GWHAAZE00000006	exon	68838358	68838672	+
GWHAAZE00000006	exon	68839051	68839508	+
GWHAAZE00000006	CDS	68829331	68829385	+
GWHAAZE00000006	CDS	68829559	68829684	+
GWHAAZE00000006	CDS	68829851	68829966	+
GWHAAZE00000006	CDS	68830843	68830931	+
GWHAAZE00000006	CDS	68831100	68831145	+
GWHAAZE00000006	CDS	68831940	68832078	+
GWHAAZE00000006	CDS	68832693	68832806	+
GWHAAZE00000006	CDS	68832909	68832967	+
GWHAAZE00000006	CDS	68833984	68834415	+
GWHAAZE00000006	CDS	68835485	68836182	+
GWHAAZE00000006	CDS	68836880	68837426	+
GWHAAZE00000006	CDS	68838358	68838672	+
GWHAAZE00000006	CDS	68839051	68839098	+
GWHAAZE00000006	three_prime_UTR	68839099	68839508	+

Transcript Sequence
>GWHTAAZE022248 ATGGAAGCTGGACGATTGGCAGGGTGGGAGATTCATGGTTTTCGAACCATGGAAGATTTGGACATTAAAAATATAATGGAAGAAGCTAAATCAAGATGGCTCCGACCAAATGAGATTCATGCGATACTCACTAACTATAAGCATTTCAGCATCAACGTGAAGCCGGTCAATTTGCCAAAAAGTGGAAAAATCGTGTTGTTTGACCGGAAAATGCTTAGAAACTTTCGGAAAGATGGTCATAACTGGAAGAAGAAAAAGGATGGGAAGACTGTCAAAGAAGCTCATGAACATTTAAAAGTTGGTAATGAGGAAAGGATCCATGTATACTACGCACATGGCCAAGATAACCCAACCTTTGTCCGCAGATGTTACTGGCTACTTGATAAAATGCTGGAACATATAGTGCTTGTTCATTATCGTGAAACTCAAGAGTTGCAGGGTTCTCCAGTCATGCCTGTTGTTTCCAATTCTAATTCTGGCCTCTCTGACCGATCTGCTTCTTGGAATTTATCAGAAGAATCTGATTCCATGGTTGATGGGGCACATTATCCTGGCAGAGAACCCCATGCAGAGCCCATCGAGACCATAAAAACTCATGAAATGAGGCTTCATGAGATTAACACACTTGAATGGGATGAACTTTTGGTATTGGATGATCCCAACAAATTGATTCCACCTGAAGGAGGAAGGTTTTCACCATTTGAGCAACAGAATCAATGTGAAATAAATGGCAACCCAAGTAATGGACACCTAGCAACCGACTATGTACCTACAGAAAATAATTCTTTGGGGAATCTCCCTGGGGCCGTTGTTGGAAGTACTATTAACTTCAATGTACTGGAAACAGTTTCCTTACCCACAGTGGGAGAACAATTGGATTCAAATTCTCAGAGTAAAGACTCTGAACTAGTGACAGTGGGCACTGGTGGTTCTTTAGACATTCTGGACAAGGATGGTTTGCAAACTCAGGACAGTTTTGGAAAATGGATCAACTACATTATGACTGATTCTCCAGGATCGGTGTATGATCCAAGTTTGGAATCCTCAATTTCAACTGGCAATGAATCATTTGCTTCTCCAATTATTGAGCATTATCATCAGTCATCTGGCCCAGACTACTTATTCAGCATAACAGATGTCTCACCGGCATGGGCCTTTTCAAACGAAGAAACAAAGATCCTAGTGCTTGGATCTTTTCAGGAAGGGCATTCACACCATACAAGGTCCCAGATATTTTGTGTCTCTGGAGACACATATGTTCCCGCAGAACATGTTCAATCTGGAGTTTTCCGCTGCTTGGTTCCACCACATACCCCTGGATTAGTTAATCTCTATTTGAGTTATGATGGCCACAAGCCCATCAGCCAATCAGTGACATTTGAGTATCGGGTGCCTCCTACACCAAATCGGACAATTACTTCGGAAAATAATTCGGATTGGGAAGAATTTCGAGTTAAGATGAGGCTTGCACATTTACTCTTCTCTACATCTAAGAGCCTCAATATTTTATCTACTAAAATACCACAAAAGTCCCTGTTGGAAGCCAAACTGTTTGCCCAAAAAACTGCTCATATTCCTGATAGTTGGACTCCTTTGATCAAGTCAATAGAAGAGAACAGAATCTCTTTTCCACAAGCAAAAGATGGATTGTTTGAGCTCATTTTGCAGAACAGACTACAGGAATGGCTGTTGGAAAGAATAGTCGAAGGGTGTAAAATATCTGATCATGATGATAAAGGTCAAGGAGCAATCCATTTGTGTGCCGTGTTAGGTTATACGTGGGCCGTCTACCCGTTTTCATGGTCCGGCTTGTCATTGGATTATCGGGACAAATCTGGATGGACAGCTCTTCATTGGGCTGCATATTATGGAAGGGAGAAGATGGTTGCAGCACTTCTTTCTGCTGGGGCAAAGCCAAATTTGGTGACCGACCCAACCTCAGAAAACCGTGCTGGACGAACCGCCGCTGATCTCGCATCAATGAACGGCTATGATGGCTTGGCTGCTTATCTTGCAGAAAAGGCTTTAGTCGACCATTTTAAGGATATGACCATAGCTGGAAATGTCACTGGTTCGTTACAAACAAGCACAACTGATTCTGAAAACTCTAAAAGCCTCACAAAGGAAGAGCTATATCTGAAAGAGACCCTGGCAGCCTATCGAATGGCTGCTGATGCAGCAGCGCGTATACAGGCTGCGATCAGGGAGCACTCACTTAAGTTGAAGATGAAAGCAGCCCAATTTTCGAATCCTGATAATGAAGCACGCAGTATAATTGCTGCAATGAAGATTCAGCATGCTTTCCGAAGCCATGAAACACGGAAAAAGATGGCAGCTGCTGTCCAAATCCAATATCGGTTCCGTGCTTGGAAAATAAGAAAAGATTTTATTAATATGCGTCGTCAGGCCATCAAAATTCAAGCTATTTTTCGGGGTTTCCAAGTCCGCAGGCAGCATAGAAAAATTATATGGTCAGTTGGAGTGCTTGAAAAAGCAATTTTACGGTGGCGCTTGAAGAGAAAAGGCTTCCGTGGTCTTCATCTTGGTCATGGTGAAGATGTAAAAGATCAGAAGCAAGAAAGTGATGTGGATGAAGAAGAGGATTTCTTCAAAGCTAGCAGAAAACAAGCTGAAGAGCGCGTGGAGAGATCCGTTGTACGGGTGCAAGCCTTGTTTCGTTCAAAACGAGCACAAGAAGAATATCAGAGGATGAAACTAGCGCACAATCAAGCAACGTTGGAATATGAAGGGCTTCTCAATCCTGAAATCAGCATGGAACAATAGAAGGTCATTTCAGTGTAGAATTTTTTGGAATCTTAACAGCTACATCAATGCCAATTGAGACAAAAAGCATTCGAGAGCAGTCTTCTGTTGTTAAAGTTAATGTGTAAATATTGTGTAAATCTTGTAAATGCGAAGATTAAGATAGTTTTTTGGCCCCCCTCTCATATGCTTTTATCTGAGTGAGGGCATTATGATTTATGAATATTTGAGGCTTTTGCCATTTTGTCATGGAAGTTGGTTTAAGTTCCTATCTTTTCTTCTCTTTTGATATTTTGAGATCATTGCTTAGTTTAGCATGCATACTGGGGAATTGTCTCCCCTTCATAAACTTATAATGTTTTATGTACAACGAACTTTGAAAGGCCGGCAGTGTATGAGTAAAATTGATAGCTTTTCTGGATTTGGTTCCA

Network for GWHGAAZE022220

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03859.17	CG-1	28	141	2.00E-46
PF01833.25	TIG	376	462	3.50E-07
PF13637.7	Ank_4	614	664	6.50E-07
PF00612.28	IQ	778	796	0.16
PF00612.28	IQ	801	820	0.0073

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	CAMTA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.947
	SRR3591706	second leaf	3.092
	SRR3591707	mature leaf	2.672
	SRR3591708	Shoot apex	19.198
	SRR3591709	Stem	36.519
	SRR3591710	White floral bud	45.017
	SRR3591711	White flower	76.796
	SRR3591712	Green floral bud	21.944
	SRR3591713	Yellow flower	76.013
SRP173429	SRR8316895	Juvenile bud stage	13.751
	SRR8316896	Juvenile bud stage	25.113
	SRR8316897	Juvenile bud stage	8.097
	SRR8316894	Third green stage	13.965
	SRR8316900	Third green stage	35.646
	SRR8316901	Third green stage	33.933
	SRR8316898	Complete white stage	21.933
	SRR8316899	Complete white stage	36.175
	SRR8316903	Complete white stage	37.342
	SRR8316902	Silver flowering stage	38.610
	SRR8316904	Silver flowering stage	40.407
	SRR8316905	Silver flowering stage	14.038
	SRR8316906	Gold flowering stage	60.035
	SRR8316907	Gold flowering stage	87.099
	SRR8316908	Gold flowering stage	56.674
SRP132670	SRR6706286	Control	30.584
	SRR6706287	Light intensity 50%	31.503
	SRR6706288	Light intensity 20%	28.379
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.126
	CNS0095593	Slightly white alabastrum(diploid) 2	26.394
	CNS0095594	Slightly white alabastrum(diploid) 3	24.457
	CNS0095595	Whole white alabastrum(diploid) 2	20.885
	CNS0095596	Whole white alabastrum(diploid) 3	10.814
	CNS0095597	Whole white alabastrum(diploid) 4	19.756
	CNS0095598	Silvery flower (diploied) 1	51.588
	CNS0095599	Silvery flower (diploied) 2	40.746
	CNS0095600	Silvery flower (diploied) 3	54.399
	CNS0095601	Golden flower (diploid) 1	43.993
	CNS0095602	Golden flower (diploid) 2	57.970
	CNS0095603	Golden flower (diploid) 3	53.279
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.988
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.354
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.051
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.305
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.231
	CNS0095610	Silvery flower (tetraploid) 1	56.131
	CNS0095611	Silvery flower (tetraploid) 2	43.266
	CNS0095612	Silvery flower (tetraploid) 3	91.500
	CNS0095613	Golden flower (tetraploid) 1	94.636
	CNS0095614	Golden flower (tetraploid) 2	43.097
	CNS0095615	Golden flower (tetraploid) 3	49.664
CRA001975	CRR073297	Stem 1	21.301
	CRR073298	Stem 2	23.735
	CRR073299	Stem 3	9.377
	CRR073300	Leaf 1	27.792
	CRR073301	Leaf 2	33.389
	CRR073302	Leaf 3	12.344
	CRR073303	Juvenile bud 1	8.611
	CRR073304	Juvenile bud 2	5.114
	CRR073305	Juvenile bud 3	18.016
	CRR073306	Third green 1	6.179
	CRR073307	Third green 2	7.378
	CRR073308	Third green 3	7.456
	CRR073309	Second white 1	13.046
	CRR073310	Second white 2	22.708
	CRR073311	Second white 3	25.567
	CRR073312	Silver flowering 1	44.888
	CRR073313	Silver flowering 2	42.195
	CRR073314	Silver flowering 3	45.644
	CRR073315	Gold flowering 1	2.337
	CRR073316	Gold flowering 2	4.767
	CRR073317	Gold flowering 3	1.746
	CRR073318	Tawny withering 1	10.501
	CRR073319	Tawny withering 2	15.022
	CRR073320	Tawny withering 3	10.498