Gene detail

Detail information of GWHGAAZE022199

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98804.1	0	unnamed protein product [Coffea canephora]
COG	YP_003290083.1	2E-11	Fis family two component sigma-54 specific transcriptional regulator
Swissprot	tr\|Q9ZWJ9\|ARR2_ARATH	3E-131	Two-component response regulator ARR2
trEMBL	tr\|A0A068TS71\|A0A068TS71_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98804.1}
TAIR10	AT4G16110.1	4E-91	response regulator 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	68396174	68399486	+
GWHAAZE00000006	mRNA	68396174	68399486	+
GWHAAZE00000006	exon	68396174	68396394	+
GWHAAZE00000006	exon	68396470	68396504	+
GWHAAZE00000006	exon	68397061	68397213	+
GWHAAZE00000006	exon	68397296	68397664	+
GWHAAZE00000006	exon	68397801	68397877	+
GWHAAZE00000006	exon	68398009	68399067	+
GWHAAZE00000006	exon	68399168	68399256	+
GWHAAZE00000006	exon	68399420	68399486	+
GWHAAZE00000006	CDS	68396174	68396394	+
GWHAAZE00000006	CDS	68396470	68396504	+
GWHAAZE00000006	CDS	68397061	68397213	+
GWHAAZE00000006	CDS	68397296	68397664	+
GWHAAZE00000006	CDS	68397801	68397877	+
GWHAAZE00000006	CDS	68398009	68399067	+
GWHAAZE00000006	CDS	68399168	68399256	+
GWHAAZE00000006	CDS	68399420	68399486	+

Transcript Sequence
>GWHTAAZE022227 ATGAATGTGGGTGGTGGTGAAAGTTCAAAATGGAAACAGTGCTCCATTGATCCTTCTTGGCAGTACAAAAAAGAGGGGATTTTTGAGATATTTCCGGCTGGTCTACGGGTGCTGGTCGTGGATGATGACCGCGTTTGCCTCGTCATTTTGGAGAAAATGCTTAAGGCTTGCCTCTACGAAGGTACATACACATATACATACATGCATCTTATTCAATCTCGGAATGACAATTCTTCATCCTTTAAATGTGAGCTGATAACCAAACGCAATCGCGCTGAGGATGCACTATCTCTACTTAGAGAGAAGAGAAATGAGTTTGATATCATTATTAGTGACGTCCACATGCCCGATATGGATGGACTGACACTCCTCGAACTCGTCGGCCTGGAAATGGACCTTCCTGTTATCATGATATCAGCGGATGATGATAAAAACATTGTGATGAAGGGTGTTACCCATGGCGCATGTGATTACTTGATCAAACCGGTCCGCATTGAGGCGTTGAGAAACATATGGCAGCATGTGGTTAGGAAAAGGAAGAACGAGTTGATGATTGACTTTGACCAATCTCAAGAGGGAAAATGTCGCCAAAAATCATCATCTGAAGAGGCTGGTAACTCGTCTGAAGGTAGTTGGAGAAATCCAAAGAGAAATATGGACGACGAAAGTGAACCCCAGGATAGGGACAATACAGCTTCTTTAAAGAAGCCGAGAGTAGTTTGGTCAGTCGAGCTCCATCAACAGTTTGTACAGGCTGTTAACCAACTTGGACTTGACAAGGCTGTTCCTAAGAAAATTCTGGAATTGATGAGTGTCCCTGGGCTCACAAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGTCTATATCTTAGAAGAGTCGGTGGAGTAGTACAGCACCCGAGTGGCTTTATCAACTCCCAAGAAGGAAATTTTGGGTCAGTAAATTCGCTGAACGGCCTTGATCTACAAATCTCATCACAAAATCTTGAAGCACTTATTGCCACTGGTCAAATCTCTCCACAAGAGCTAGCAGCACTTGGTAGATCCACCACCAAATCCGCCTTATCCGTGCCCCAAACTTATCAAAGAAACCTCTTCACCTTCGAAAGATTTCAAGAAGACAAACGGCAAAATAATAAAAGTAACCAAATAGACTTACTCCCAACAAGTATGGAACCAAACCAACTCACCAATATGCATCCATCTACTCGGCAGTTTGGATGCACAAATATGCAAGCTCATCCTGGCATAAGCCAGAGTAGCAGTGTACTGATGCAGTTCACTCAACAACAGCCTATCGTGTTGCATAATATTGGTGGTGGTGTCTTGGGTCGAAATCGGACGATTGAGAATGCTGGAGGGGGAGCTTATAATCCAGCCTCATCGGTGCTAGATTTCTCAATGAACCAAAGTACTGGCTTGTCAAGCAGCAGTTTTTCATTTGGGAGCAGTTCAGGGATATCAGCTCTCGCGTCAGAAGCGTTGCTCCAAAATGAGGCTAACATGGAAATGAAAGTACCAAGAGCACTTGTTCCAAGTTATGATAATTTCAACAAGTTGAATCAGCAAAAATCCCAAGAACGGAGTTTACATAATCCAGTTCTGGGCTATAATGCTTCCCAAAACACGAATAGACAAGGAACCCTAGCTGTGTCGCCATCGGTTTTAGTCCACCAAGGTTTTATTTCTACCCGGCAGAACAGGAATTCGTCTATCGGCAAAGGAATTTTCTCACCTGGGGAAGGGAGGGGACCCCTCAACACCCCAAATATTGGAAAACAAATGAACATGTTTGACATTGACAATCCTGTTAGGGTTAAGACTGAGAGCCTGCACAAATCAAGCTATCAACATACGCTATATCCTGATCATTTCAGTCAGGAGGATCTCCTCAGTGCAATTCTTAAGCAGCAGCAAGAAGGCATGGGAGAGCAAGAAGGAAATGGAGAGCTTGAAGATGAGTTTGGGTTTATGGGTTTCTCGTTGGATAATCTTCCCATCTTTTTGCGCTTGTTGGGAATCAAGGAACCAAAGGAGCAGTACTTTAGGCGGGGAAAGCAGCAATGA

Network for GWHGAAZE022199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	86	170	5.60E-16
PF00249.32	Myb_DNA-binding	238	288	3.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.965
	SRR3591706	second leaf	1.786
	SRR3591707	mature leaf	0.289
	SRR3591708	Shoot apex	10.261
	SRR3591709	Stem	3.672
	SRR3591710	White floral bud	14.185
	SRR3591711	White flower	3.317
	SRR3591712	Green floral bud	69.072
	SRR3591713	Yellow flower	0.577
SRP173429	SRR8316895	Juvenile bud stage	19.909
	SRR8316896	Juvenile bud stage	15.381
	SRR8316897	Juvenile bud stage	6.401
	SRR8316894	Third green stage	12.228
	SRR8316900	Third green stage	44.936
	SRR8316901	Third green stage	52.882
	SRR8316898	Complete white stage	2.769
	SRR8316899	Complete white stage	214.772
	SRR8316903	Complete white stage	4.180
	SRR8316902	Silver flowering stage	0.091
	SRR8316904	Silver flowering stage	0.084
	SRR8316905	Silver flowering stage	0.074
	SRR8316906	Gold flowering stage	0.104
	SRR8316907	Gold flowering stage	0.089
	SRR8316908	Gold flowering stage	0.035
SRP132670	SRR6706286	Control	51.735
	SRR6706287	Light intensity 50%	58.943
	SRR6706288	Light intensity 20%	68.272
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.835
	CNS0095593	Slightly white alabastrum(diploid) 2	19.509
	CNS0095594	Slightly white alabastrum(diploid) 3	7.808
	CNS0095595	Whole white alabastrum(diploid) 2	18.110
	CNS0095596	Whole white alabastrum(diploid) 3	16.462
	CNS0095597	Whole white alabastrum(diploid) 4	24.584
	CNS0095598	Silvery flower (diploied) 1	1.359
	CNS0095599	Silvery flower (diploied) 2	1.613
	CNS0095600	Silvery flower (diploied) 3	1.323
	CNS0095601	Golden flower (diploid) 1	0.648
	CNS0095602	Golden flower (diploid) 2	0.859
	CNS0095603	Golden flower (diploid) 3	1.249
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.949
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.235
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.384
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.786
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.910
	CNS0095610	Silvery flower (tetraploid) 1	1.056
	CNS0095611	Silvery flower (tetraploid) 2	1.624
	CNS0095612	Silvery flower (tetraploid) 3	0.516
	CNS0095613	Golden flower (tetraploid) 1	0.090
	CNS0095614	Golden flower (tetraploid) 2	0.089
	CNS0095615	Golden flower (tetraploid) 3	0.041
CRA001975	CRR073297	Stem 1	44.865
	CRR073298	Stem 2	33.433
	CRR073299	Stem 3	46.322
	CRR073300	Leaf 1	84.520
	CRR073301	Leaf 2	51.173
	CRR073302	Leaf 3	62.169
	CRR073303	Juvenile bud 1	99.770
	CRR073304	Juvenile bud 2	47.710
	CRR073305	Juvenile bud 3	122.706
	CRR073306	Third green 1	0.194
	CRR073307	Third green 2	0.412
	CRR073308	Third green 3	0.572
	CRR073309	Second white 1	0.034
	CRR073310	Second white 2	0.121
	CRR073311	Second white 3	0.103
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.079
	CRR073314	Silver flowering 3	0.067
	CRR073315	Gold flowering 1	0.527
	CRR073316	Gold flowering 2	0.740
	CRR073317	Gold flowering 3	0.432
	CRR073318	Tawny withering 1	0.595
	CRR073319	Tawny withering 2	1.828
	CRR073320	Tawny withering 3	0.966