Gene detail

Detail information of GWHGAAZE022181

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009615584.1	1.0668E-160	PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]
COG	YP_006407803.1	2E-59	pectin methylesterase
Swissprot	tr\|Q9FJ21\|PME58_ARATH	1E-138	Pectinesterase 58 (Precursor)
trEMBL	tr\|A0A068TS15\|A0A068TS15_COFCA	3E-160	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G49180.1	9E-115	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	68082990	68084160	+
GWHAAZE00000006	mRNA	68082990	68084160	+
GWHAAZE00000006	exon	68082990	68083371	+
GWHAAZE00000006	exon	68083460	68083824	+
GWHAAZE00000006	exon	68083855	68084160	+
GWHAAZE00000006	CDS	68082990	68083371	+
GWHAAZE00000006	CDS	68083460	68083824	+
GWHAAZE00000006	CDS	68083855	68084160	+

Transcript Sequence
>GWHTAAZE022209 ATGCAAATCCCAGGTGTCAGCCGCCGGCTCTTCTCTACCGAGGATGAATCATCCACTAACGAAAATGGTACTCCAGAGTGGGTGGACCCCGTTAGAAGGTCAATCCTGGTAGCTAATGTCAAGGACCTAAAACCTAGTGCTACGGTTTCTCAAGATGGCAGCGGACAGTTTAAAACTATTCAGGAAGCCGTAAACAAAATACCTCTAAAAAATGCCCAACCATTTGTGGTCCTTATCAAGGCCGGCATCTACAAGGAGTATGTTCAAATTCCCAGGCACGTCAACAACGTTGTGTTTGTTGGCGAAGGGGCAGAAAAAACCAAGATCACTGGTAACAAGAACTTCGCGGACGGAGTTGGTACTTACCAGACCGCTACAGTTGCGGTGAATGGTGATAACTTCGTCGCAAGGGACATAGGATTTGAGAACAGTGCAGGACCCGAGAAACACCAGGCAGTGGCACTGCGTGTGTCTGGCGACATGGCCATATTCTACAACTGCAGGATGGACGCATACCAGGATACCCTTTACACTCACTCCTACCGTCAGTACTACCGCGATTGTACTATCACAGGCACCATTGACTTCATCTTTGGGGATGCAGCTGTCATATTCCAGAACTGCAGGATGGAGGTGAGGAAGCCAGGTCCTAATCAGAATTGCATGGTGACAGCTCAGGGTAGGAAAGACCATAGGAGCGTCGGTGGAACCGTACTCCAGAACTGCACCATCACTGGGGAGCCAGTGTCTTACTTAGGACGCCCATGGAAGGAGTTCTCAAGGACCATCATCATGAATTCTTTCATCGACAGCAACATTGACCCAGAAGGATGGGCCGTATGGAATGGCAATTTTGCGTTGGACACATTATACTACGTGGAGCTCATGAACAGAGGACCTGGTTCGGACCAATCTAAGAGAGTTGCATGGAGAGGTATTCAGAAGATTTCTCCGCAGCAAGCTGAGTCATTCACGGGGGGAAAGTTCTTCTTGGGCGACGAGTGGGTCAGAGTCAGTGGGATTGCCTATGAACCAGGCATGATCAAAGCATAA

Network for GWHGAAZE022181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	47	332	4.20E-130

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.695
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.297
	SRR3591708	Shoot apex	0.735
	SRR3591709	Stem	6.968
	SRR3591710	White floral bud	744.509
	SRR3591711	White flower	36.147
	SRR3591712	Green floral bud	769.143
	SRR3591713	Yellow flower	24.045
SRP173429	SRR8316895	Juvenile bud stage	41.479
	SRR8316896	Juvenile bud stage	203.536
	SRR8316897	Juvenile bud stage	98.753
	SRR8316894	Third green stage	86.483
	SRR8316900	Third green stage	473.481
	SRR8316901	Third green stage	509.239
	SRR8316898	Complete white stage	0.498
	SRR8316899	Complete white stage	3.717
	SRR8316903	Complete white stage	0.804
	SRR8316902	Silver flowering stage	7.459
	SRR8316904	Silver flowering stage	12.808
	SRR8316905	Silver flowering stage	4.886
	SRR8316906	Gold flowering stage	2.331
	SRR8316907	Gold flowering stage	1.052
	SRR8316908	Gold flowering stage	0.938
SRP132670	SRR6706286	Control	270.809
	SRR6706287	Light intensity 50%	267.784
	SRR6706288	Light intensity 20%	239.899
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	578.479
	CNS0095593	Slightly white alabastrum(diploid) 2	479.071
	CNS0095594	Slightly white alabastrum(diploid) 3	735.870
	CNS0095595	Whole white alabastrum(diploid) 2	1148.171
	CNS0095596	Whole white alabastrum(diploid) 3	1339.426
	CNS0095597	Whole white alabastrum(diploid) 4	1512.526
	CNS0095598	Silvery flower (diploied) 1	37.031
	CNS0095599	Silvery flower (diploied) 2	135.564
	CNS0095600	Silvery flower (diploied) 3	26.139
	CNS0095601	Golden flower (diploid) 1	39.814
	CNS0095602	Golden flower (diploid) 2	23.425
	CNS0095603	Golden flower (diploid) 3	21.397
	CNS0095604	Slightly white alabastrum(tetraploid) 1	663.836
	CNS0095605	Slightly white alabastrum(tetraploid) 2	805.498
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	1433.087
	CNS0095608	Whole white alabastrum(tetraploid) 2	1461.636
	CNS0095609	Whole white alabastrum(tetraploid) 3	638.526
	CNS0095610	Silvery flower (tetraploid) 1	14.646
	CNS0095611	Silvery flower (tetraploid) 2	64.423
	CNS0095612	Silvery flower (tetraploid) 3	145.486
	CNS0095613	Golden flower (tetraploid) 1	29.083
	CNS0095614	Golden flower (tetraploid) 2	5.975
	CNS0095615	Golden flower (tetraploid) 3	75.014
CRA001975	CRR073297	Stem 1	90.988
	CRR073298	Stem 2	118.677
	CRR073299	Stem 3	52.306
	CRR073300	Leaf 1	427.640
	CRR073301	Leaf 2	306.435
	CRR073302	Leaf 3	157.735
	CRR073303	Juvenile bud 1	297.166
	CRR073304	Juvenile bud 2	208.694
	CRR073305	Juvenile bud 3	36.765
	CRR073306	Third green 1	220.028
	CRR073307	Third green 2	266.861
	CRR073308	Third green 3	223.566
	CRR073309	Second white 1	15.349
	CRR073310	Second white 2	32.363
	CRR073311	Second white 3	34.736
	CRR073312	Silver flowering 1	171.460
	CRR073313	Silver flowering 2	164.673
	CRR073314	Silver flowering 3	92.978
	CRR073315	Gold flowering 1	177.515
	CRR073316	Gold flowering 2	38.377
	CRR073317	Gold flowering 3	99.471
	CRR073318	Tawny withering 1	161.266
	CRR073319	Tawny withering 2	144.242
	CRR073320	Tawny withering 3	137.428