Detail information of GWHGAAZE022159


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002269627.20PREDICTED: RNA-binding protein NOB1 [Vitis vinifera]
trEMBLtr|F6HUD6|F6HUD6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58359.1}
TAIR10AT5G41190.10Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6778383867786754-
GWHAAZE00000006mRNA6778383867786754-
GWHAAZE00000006exon6778383867783990-
GWHAAZE00000006exon6778409867784214-
GWHAAZE00000006exon6778448767784655-
GWHAAZE00000006exon6778484167785975-
GWHAAZE00000006exon6778643067786754-
GWHAAZE00000006CDS6778643067786754-
GWHAAZE00000006CDS6778484167785975-
GWHAAZE00000006CDS6778448767784655-
GWHAAZE00000006CDS6778409867784214-
GWHAAZE00000006CDS6778383867783990-
Transcript Sequence

Network for GWHGAAZE022159

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17146.5PIN_6501369.30E-26
PF08772.12NOB1_Zn_bind4865521.50E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11883NOB1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.538
SRR3591706second leaf9.231
SRR3591707mature leaf10.538
SRR3591708Shoot apex20.393
SRR3591709Stem13.864
SRR3591710White floral bud15.426
SRR3591711White flower21.840
SRR3591712Green floral bud20.774
SRR3591713Yellow flower15.485
SRP173429 SRR8316895Juvenile bud stage 14.897
SRR8316896Juvenile bud stage 18.425
SRR8316897Juvenile bud stage 7.641
SRR8316894Third green stage 7.239
SRR8316900Third green stage 23.479
SRR8316901Third green stage 21.044
SRR8316898Complete white stage 4.248
SRR8316899Complete white stage 23.304
SRR8316903Complete white stage 8.096
SRR8316902Silver flowering stage6.942
SRR8316904Silver flowering stage10.133
SRR8316905Silver flowering stage4.537
SRR8316906Gold flowering stage 14.358
SRR8316907Gold flowering stage 13.113
SRR8316908Gold flowering stage 12.497
SRP132670SRR6706286Control28.126
SRR6706287Light intensity 50%25.815
SRR6706288Light intensity 20%27.394
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.813
CNS0095593Slightly white alabastrum(diploid) 218.019
CNS0095594Slightly white alabastrum(diploid) 315.619
CNS0095595Whole white alabastrum(diploid) 213.921
CNS0095596Whole white alabastrum(diploid) 312.504
CNS0095597Whole white alabastrum(diploid) 412.457
CNS0095598Silvery flower (diploied) 120.392
CNS0095599Silvery flower (diploied) 216.542
CNS0095600Silvery flower (diploied) 315.515
CNS0095601Golden flower (diploid) 110.988
CNS0095602Golden flower (diploid) 215.725
CNS0095603Golden flower (diploid) 314.667
CNS0095604Slightly white alabastrum(tetraploid) 117.109
CNS0095605Slightly white alabastrum(tetraploid) 214.645
CNS0095606Slightly white alabastrum(tetraploid) 327.792
CNS0095607Whole white alabastrum(tetraploid) 17.835
CNS0095608Whole white alabastrum(tetraploid) 28.209
CNS0095609Whole white alabastrum(tetraploid) 317.765
CNS0095610Silvery flower (tetraploid) 114.321
CNS0095611Silvery flower (tetraploid) 212.882
CNS0095612Silvery flower (tetraploid) 38.352
CNS0095613Golden flower (tetraploid) 16.970
CNS0095614Golden flower (tetraploid) 212.200
CNS0095615Golden flower (tetraploid) 37.023
CRA001975CRR073297Stem 125.849
CRR073298Stem 221.080
CRR073299Stem 323.702
CRR073300Leaf 121.359
CRR073301Leaf 223.721
CRR073302Leaf 318.767
CRR073303Juvenile bud 120.507
CRR073304Juvenile bud 211.319
CRR073305Juvenile bud 327.782
CRR073306Third green 14.517
CRR073307Third green 24.794
CRR073308Third green 36.029
CRR073309Second white 18.903
CRR073310Second white 26.717
CRR073311Second white 37.366
CRR073312Silver flowering 16.052
CRR073313Silver flowering 27.658
CRR073314Silver flowering 35.866
CRR073315Gold flowering 18.017
CRR073316Gold flowering 210.297
CRR073317Gold flowering 310.508
CRR073318Tawny withering 120.474
CRR073319Tawny withering 216.568
CRR073320Tawny withering 325.908