Detail information of GWHGAAZE022117


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275310.10PREDICTED: anaphase-promoting complex subunit 7 [Vitis vinifera]
COGNP_213582.15E-11hypothetical protein aq_854
Swissprottr|Q8VY89|APC7_ARATH0Anaphase-promoting complex subunit 7
trEMBLtr|D7T6H7|D7T6H7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI26098.3}
TAIR10AT2G39090.20tetratricopeptide repeat (TPR)-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6712117667129103-
GWHAAZE00000006mRNA6712117667129103-
GWHAAZE00000006exon6712903567129103-
GWHAAZE00000006exon6712867367128723-
GWHAAZE00000006exon6712751967127653-
GWHAAZE00000006exon6712734067127402-
GWHAAZE00000006exon6712640667126521-
GWHAAZE00000006exon6712593367126017-
GWHAAZE00000006exon6712536667125425-
GWHAAZE00000006exon6712441767124462-
GWHAAZE00000006exon6712366867123741-
GWHAAZE00000006exon6712289567122945-
GWHAAZE00000006exon6712261667122816-
GWHAAZE00000006exon6712248767122531-
GWHAAZE00000006exon6712213367122226-
GWHAAZE00000006exon6712186267122007-
GWHAAZE00000006exon6712117667121436-
GWHAAZE00000006CDS6712903567129103-
GWHAAZE00000006CDS6712867367128723-
GWHAAZE00000006CDS6712751967127653-
GWHAAZE00000006CDS6712734067127402-
GWHAAZE00000006CDS6712640667126521-
GWHAAZE00000006CDS6712593367126017-
GWHAAZE00000006CDS6712536667125425-
GWHAAZE00000006CDS6712441767124462-
GWHAAZE00000006CDS6712366867123741-
GWHAAZE00000006CDS6712289567122945-
GWHAAZE00000006CDS6712261667122816-
GWHAAZE00000006CDS6712248767122531-
GWHAAZE00000006CDS6712213367122226-
GWHAAZE00000006CDS6712186267122007-
GWHAAZE00000006CDS6712117667121436-
Transcript Sequence

Network for GWHGAAZE022117

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13176.7TPR_723470.0043
PF13181.7TPR_83273580.031
PF14559.7TPR_194124621.10E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03354APC7 Ubiquitin mediated proteolysis map04120
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.013
SRR3591706second leaf4.332
SRR3591707mature leaf4.596
SRR3591708Shoot apex17.766
SRR3591709Stem10.627
SRR3591710White floral bud5.119
SRR3591711White flower7.220
SRR3591712Green floral bud6.955
SRR3591713Yellow flower9.706
SRP173429 SRR8316895Juvenile bud stage 9.345
SRR8316896Juvenile bud stage 12.996
SRR8316897Juvenile bud stage 5.123
SRR8316894Third green stage 5.659
SRR8316900Third green stage 11.661
SRR8316901Third green stage 10.995
SRR8316898Complete white stage 3.456
SRR8316899Complete white stage 15.738
SRR8316903Complete white stage 6.121
SRR8316902Silver flowering stage3.491
SRR8316904Silver flowering stage5.486
SRR8316905Silver flowering stage1.998
SRR8316906Gold flowering stage 7.628
SRR8316907Gold flowering stage 6.237
SRR8316908Gold flowering stage 9.440
SRP132670SRR6706286Control13.122
SRR6706287Light intensity 50%13.640
SRR6706288Light intensity 20%15.788
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.390
CNS0095593Slightly white alabastrum(diploid) 24.514
CNS0095594Slightly white alabastrum(diploid) 34.067
CNS0095595Whole white alabastrum(diploid) 24.413
CNS0095596Whole white alabastrum(diploid) 35.152
CNS0095597Whole white alabastrum(diploid) 43.892
CNS0095598Silvery flower (diploied) 19.643
CNS0095599Silvery flower (diploied) 25.446
CNS0095600Silvery flower (diploied) 311.928
CNS0095601Golden flower (diploid) 15.821
CNS0095602Golden flower (diploid) 210.815
CNS0095603Golden flower (diploid) 310.961
CNS0095604Slightly white alabastrum(tetraploid) 17.929
CNS0095605Slightly white alabastrum(tetraploid) 26.396
CNS0095606Slightly white alabastrum(tetraploid) 319.400
CNS0095607Whole white alabastrum(tetraploid) 16.378
CNS0095608Whole white alabastrum(tetraploid) 23.777
CNS0095609Whole white alabastrum(tetraploid) 311.324
CNS0095610Silvery flower (tetraploid) 113.821
CNS0095611Silvery flower (tetraploid) 215.796
CNS0095612Silvery flower (tetraploid) 39.835
CNS0095613Golden flower (tetraploid) 14.867
CNS0095614Golden flower (tetraploid) 211.449
CNS0095615Golden flower (tetraploid) 38.093
CRA001975CRR073297Stem 115.726
CRR073298Stem 214.419
CRR073299Stem 316.746
CRR073300Leaf 117.058
CRR073301Leaf 216.519
CRR073302Leaf 315.751
CRR073303Juvenile bud 114.475
CRR073304Juvenile bud 29.764
CRR073305Juvenile bud 319.298
CRR073306Third green 12.993
CRR073307Third green 23.142
CRR073308Third green 33.359
CRR073309Second white 12.727
CRR073310Second white 22.972
CRR073311Second white 33.567
CRR073312Silver flowering 13.977
CRR073313Silver flowering 23.489
CRR073314Silver flowering 33.413
CRR073315Gold flowering 15.954
CRR073316Gold flowering 26.521
CRR073317Gold flowering 34.265
CRR073318Tawny withering 19.779
CRR073319Tawny withering 28.121
CRR073320Tawny withering 310.545