Detail information of GWHGAAZE022095


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP40034.14.95617E-46hypothetical protein JCGZ_02032 [Jatropha curcas]
COGNP_619453.11E-19shikimate 5-dehydrogenase
Swissprottr|Q9SQT8|DHQSD_ARATH2E-43Shikimate dehydrogenase (Precursor)
trEMBLtr|A0A067L7F9|A0A067L7F9_JATCU2E-46Uncharacterized protein {ECO:0000313|EMBL:KDP40034.1}
TAIR10AT3G06350.13E-37dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6680733366808738-
GWHAAZE00000006mRNA6680733366808738-
GWHAAZE00000006exon6680733366807547-
GWHAAZE00000006exon6680765166807696-
GWHAAZE00000006exon6680784566808007-
GWHAAZE00000006exon6680867366808738-
GWHAAZE00000006CDS6680867366808738-
GWHAAZE00000006CDS6680784566808007-
GWHAAZE00000006CDS6680765666807696-
GWHAAZE00000006three_prime_UTR6680765166807655-
GWHAAZE00000006three_prime_UTR6680733366807547-
Transcript Sequence

Network for GWHGAAZE022095

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18317.2SDH_C57864.40E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13832aroDE, DHQ-SDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.931
SRR3591706second leaf12.033
SRR3591707mature leaf5.108
SRR3591708Shoot apex17.905
SRR3591709Stem15.520
SRR3591710White floral bud3.122
SRR3591711White flower14.926
SRR3591712Green floral bud2.300
SRR3591713Yellow flower23.277
SRP173429 SRR8316895Juvenile bud stage 18.364
SRR8316896Juvenile bud stage 36.113
SRR8316897Juvenile bud stage 30.463
SRR8316894Third green stage 5.092
SRR8316900Third green stage 8.532
SRR8316901Third green stage 8.689
SRR8316898Complete white stage 2.056
SRR8316899Complete white stage 3.435
SRR8316903Complete white stage 1.798
SRR8316902Silver flowering stage7.876
SRR8316904Silver flowering stage7.629
SRR8316905Silver flowering stage4.997
SRR8316906Gold flowering stage 32.621
SRR8316907Gold flowering stage 31.873
SRR8316908Gold flowering stage 33.729
SRP132670SRR6706286Control6.533
SRR6706287Light intensity 50%6.189
SRR6706288Light intensity 20%5.643
CNP0000432CNS0095592Slightly white alabastrum(diploid) 134.359
CNS0095593Slightly white alabastrum(diploid) 232.200
CNS0095594Slightly white alabastrum(diploid) 353.028
CNS0095595Whole white alabastrum(diploid) 226.064
CNS0095596Whole white alabastrum(diploid) 38.033
CNS0095597Whole white alabastrum(diploid) 411.862
CNS0095598Silvery flower (diploied) 134.727
CNS0095599Silvery flower (diploied) 234.949
CNS0095600Silvery flower (diploied) 39.004
CNS0095601Golden flower (diploid) 139.678
CNS0095602Golden flower (diploid) 214.631
CNS0095603Golden flower (diploid) 312.717
CNS0095604Slightly white alabastrum(tetraploid) 18.212
CNS0095605Slightly white alabastrum(tetraploid) 210.738
CNS0095606Slightly white alabastrum(tetraploid) 35.569
CNS0095607Whole white alabastrum(tetraploid) 12.966
CNS0095608Whole white alabastrum(tetraploid) 23.711
CNS0095609Whole white alabastrum(tetraploid) 36.739
CNS0095610Silvery flower (tetraploid) 12.249
CNS0095611Silvery flower (tetraploid) 21.173
CNS0095612Silvery flower (tetraploid) 35.998
CNS0095613Golden flower (tetraploid) 110.955
CNS0095614Golden flower (tetraploid) 28.787
CNS0095615Golden flower (tetraploid) 311.878
CRA001975CRR073297Stem 114.841
CRR073298Stem 218.213
CRR073299Stem 38.938
CRR073300Leaf 14.225
CRR073301Leaf 26.596
CRR073302Leaf 35.733
CRR073303Juvenile bud 11.390
CRR073304Juvenile bud 21.412
CRR073305Juvenile bud 32.443
CRR073306Third green 16.169
CRR073307Third green 25.664
CRR073308Third green 36.234
CRR073309Second white 125.009
CRR073310Second white 224.004
CRR073311Second white 352.185
CRR073312Silver flowering 189.546
CRR073313Silver flowering 256.251
CRR073314Silver flowering 363.339
CRR073315Gold flowering 17.330
CRR073316Gold flowering 214.394
CRR073317Gold flowering 35.259
CRR073318Tawny withering 19.866
CRR073319Tawny withering 218.443
CRR073320Tawny withering 39.481