Gene detail

Detail information of GWHGAAZE022064

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98979.1	9.5705E-137	unnamed protein product [Coffea canephora]
COG	YP_004175644.1	7E-70	guanylate kinase
Swissprot	tr\|Q10M74\|GMK2_ORYSJ	4E-114	Guanylate kinase 2, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A068TSN1\|A0A068TSN1_COFCA	4E-137	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98979.1}
TAIR10	AT3G06200.1	6E-90	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66388404	66389126	+
GWHAAZE00000006	mRNA	66388404	66389126	+
GWHAAZE00000006	exon	66388404	66389126	+
GWHAAZE00000006	CDS	66388404	66389126	+

Transcript Sequence
>GWHTAAZE022092 ATGGGTGATGCCCGGCGACCCCCCACTGTTCCCATACCGTCTGTTGATACGGCTGATAAGCTCGAATTGTATCGAGCACTTGAAGCTTCACTGGGTTCAACTTTTAGCACGGAGCCTCTGGTCCCAAACCCTAACCCTTTGATAATGGTTATAAGTGGACCAAGCGGGGTTGGTAAAGATGCTGTGATCAAAAGATTGAGAGAAATTAGGGCTAGCATTCACTTTGTTGTAACAGCCACGAGCCGGGCAATGCGACCCGGTGAAGTCGATGGTAAAGATTACTTCTTTGTCAGCAAAGAGGATTTCTTGTCAATGATAGATAGGGACGAGCTATTGGAATACGCATTGGTGTACGGTGATTATAAGGGGATTCCCAAGCAGCAAATTAGGGATTTTATGGCGAAAGGGAACGATATTGTGCTGAGGGTGGACATACAGGGGGCTAAAACACTGAAAAAGATTCTTGGGAACTCTGCTGTGTTTGTTTTTCTTGCGGCAGAGAGTGAATCAGCACTTGTGCAGAGGTTGATTGGGAGGAAAACTGAGACAAAGGAGACTCTGCTTGTGAGGGTTGCCACTGCTCGAGAGGAGTTTCGGCACGCAAAGTACTTTGATTATGTTGTAGTGAATGCAGAAGGGAAGTTGGAGGATTCGGTTAAGTTATTGGAATCGATTATTGTTGCGGAGAAAGCTAGGGTTTCGCAAAGGAATGCGGTTATTTGA

Network for GWHGAAZE022064

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00625.22	Guanylate_kin	49	228	1.60E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00942	E2.7.4.8, gmk	Metabolic pathways	map01100
K00942	E2.7.4.8, gmk	Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0006163	biological_process	purine nucleotide metabolic process
GO:0004385	molecular_function	guanylate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.327
	SRR3591706	second leaf	6.849
	SRR3591707	mature leaf	9.734
	SRR3591708	Shoot apex	10.067
	SRR3591709	Stem	11.324
	SRR3591710	White floral bud	5.960
	SRR3591711	White flower	12.161
	SRR3591712	Green floral bud	12.061
	SRR3591713	Yellow flower	7.793
SRP173429	SRR8316895	Juvenile bud stage	4.040
	SRR8316896	Juvenile bud stage	7.128
	SRR8316897	Juvenile bud stage	3.362
	SRR8316894	Third green stage	3.413
	SRR8316900	Third green stage	9.906
	SRR8316901	Third green stage	9.003
	SRR8316898	Complete white stage	3.138
	SRR8316899	Complete white stage	10.473
	SRR8316903	Complete white stage	4.044
	SRR8316902	Silver flowering stage	4.117
	SRR8316904	Silver flowering stage	5.003
	SRR8316905	Silver flowering stage	1.748
	SRR8316906	Gold flowering stage	5.539
	SRR8316907	Gold flowering stage	8.379
	SRR8316908	Gold flowering stage	8.630
SRP132670	SRR6706286	Control	11.777
	SRR6706287	Light intensity 50%	10.719
	SRR6706288	Light intensity 20%	11.123
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.203
	CNS0095593	Slightly white alabastrum(diploid) 2	9.434
	CNS0095594	Slightly white alabastrum(diploid) 3	5.081
	CNS0095595	Whole white alabastrum(diploid) 2	7.257
	CNS0095596	Whole white alabastrum(diploid) 3	5.705
	CNS0095597	Whole white alabastrum(diploid) 4	6.237
	CNS0095598	Silvery flower (diploied) 1	7.278
	CNS0095599	Silvery flower (diploied) 2	5.442
	CNS0095600	Silvery flower (diploied) 3	8.649
	CNS0095601	Golden flower (diploid) 1	8.801
	CNS0095602	Golden flower (diploid) 2	12.047
	CNS0095603	Golden flower (diploid) 3	9.265
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.380
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.967
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.083
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.778
	CNS0095610	Silvery flower (tetraploid) 1	9.678
	CNS0095611	Silvery flower (tetraploid) 2	5.835
	CNS0095612	Silvery flower (tetraploid) 3	3.993
	CNS0095613	Golden flower (tetraploid) 1	5.075
	CNS0095614	Golden flower (tetraploid) 2	8.885
	CNS0095615	Golden flower (tetraploid) 3	4.206
CRA001975	CRR073297	Stem 1	9.712
	CRR073298	Stem 2	9.305
	CRR073299	Stem 3	9.193
	CRR073300	Leaf 1	7.554
	CRR073301	Leaf 2	7.477
	CRR073302	Leaf 3	6.651
	CRR073303	Juvenile bud 1	8.251
	CRR073304	Juvenile bud 2	4.313
	CRR073305	Juvenile bud 3	7.987
	CRR073306	Third green 1	3.328
	CRR073307	Third green 2	4.208
	CRR073308	Third green 3	3.926
	CRR073309	Second white 1	5.571
	CRR073310	Second white 2	2.931
	CRR073311	Second white 3	1.961
	CRR073312	Silver flowering 1	3.040
	CRR073313	Silver flowering 2	4.300
	CRR073314	Silver flowering 3	2.415
	CRR073315	Gold flowering 1	6.975
	CRR073316	Gold flowering 2	9.154
	CRR073317	Gold flowering 3	9.243
	CRR073318	Tawny withering 1	8.998
	CRR073319	Tawny withering 2	8.863
	CRR073320	Tawny withering 3	7.963