Gene detail

Detail information of GWHGAAZE021985

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004247624.1	0	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Solanum lycopersicum]
COG	NP_285649.1	6E-17	chalcone synthase
Swissprot	tr\|O48780\|KCS11_ARATH	0	3-ketoacyl-CoA synthase 11
trEMBL	tr\|K4CVT1\|K4CVT1_SOLLC	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT2G26640.1	0	3-ketoacyl-CoA synthase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65224943	65227423	-
GWHAAZE00000006	mRNA	65224943	65227423	-
GWHAAZE00000006	exon	65224943	65225725	-
GWHAAZE00000006	exon	65226656	65227423	-
GWHAAZE00000006	CDS	65226656	65227423	-
GWHAAZE00000006	CDS	65224943	65225725	-

Transcript Sequence
>GWHTAAZE022011 ATGGAGAACACAAACAATCTGCAATTAGGTTCGGCCTCGATCCGTCCACCTCGAAAGAAAACGCTCCCCAACTTTCTATTATCCGTTCGTCTCAAATATGTAAAACTCGGGTACCATTACTTAATCACACATGCGATGTACCTATTACTTGTGCCTCTATTGGGCGTAGTGTCTGTCAATCTTTCCACTCTTAGTGCGGAAGACTTGGGCCAATTATGGGACCATCTAAAGTTCAATTTAGTTACGGTGGTACTTTGTTCAGCTCTGATTGTCTTCATGGCCACCCTTTACTTTATGAGGCGCCCTAAAAAGGTCTATTTGGTAAATTTTGCGTGTTTTAAGCCCCAACCCGACGTGATGTGCCCCAGGGAACTTTTCATGGAGCGGTCTACCATTGCAGGGACCTTTAATGAAGAGAATTTGGCCTTTCAGAAGAAAATTCTTGAGAGGTCGGGTTTGGGGCAGAAGACTTATTTCCCTGAGGCGCTTTTGCGGATCCCACCTAACCCGTGTATGGCCGAGGCGAGGAAAGAGGCCGAAATGGTGATGTTTGGTGCCATTGATGAGCTTTTGGAGAAGACTGGGGTTAAGGCAAAGGATATTGGGATACTTGTGGTGAATTGCAGCTTGTTTAATCCGACCCCGTCTCTTTCGGCTATGGTGGTGAATCATTACAAGCTTAGGGGGAATATTTTGAGCTATAATCTTGGTGGGATGGGTTGTAGTGCTGGATTAATTTCAATTGACCTTGCCAAACAACTTTTACAGGTGCAACCCAACTCTTATGCCTTGGTTGTGAGTATGGAAAATATAACCCTGAACTGGTACTTTGGTAACAATCGGTCAATGCTTGTCTCAAATTGTCTCTTTCGAATGGGTGGCGCCGCAATCCTCCTTTCCAACCGATCATCCGATCGTCGTCGATCAAAGTATCAACTAATCCACACTGTACGAACCCACAAAGGCGCTGATGATAAATGTTATGGTTGTGTGTTTCAAGAAGAAGATGAAAACAAAAGCATTGGCGTTGCACTTTCAAAAGACCTAATGGCTGTAGCTGGTGAGGCTTTAAAGACAAATATCACAACTCTCGGGCCCTTAGTCCTTCCCATGTCCGAGCAACTTCTGTTTTTCGCGACCTTAGTCGCGAGAAAAGTTTTTAAAATGAAAATCAAGCCATATATTCCTGATTTTAAGCTTGCATTTGAGCATTTTTGTATTCATGCTGGAGGAAGAGCAGTGCTAGATGAGTTGGAGAAGAACCTTGAACTCACTGAGTGGCATATGGAGCCTTCACGAATGACTCTTAACCGATTTGGCAATACATCTAGTAGTTCATTGTGGTATGAATTGGCCTATTCTGAGGCTAAGGGGAGAATCAAAAAGGGTGATCGGACATGGCAAATTGCTTTTGGGTCCGGTTTCAAGTGTAACAGTGCTGTGTGGCGCGCTCTGAAGACCATTGATCCAGCCAAGGAGAAGAACCCTTGGATGGATGAGATTGATGAATTTCCGGTTCACGTGCCAAAAATTTCACCCGTTCTTTCTTAA

Network for GWHGAAZE021985

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	97	386	9.60E-144
PF08541.11	ACP_syn_III_C	403	483	8.90E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.236
	SRR3591706	second leaf	30.159
	SRR3591707	mature leaf	27.093
	SRR3591708	Shoot apex	28.239
	SRR3591709	Stem	8.720
	SRR3591710	White floral bud	10.781
	SRR3591711	White flower	19.791
	SRR3591712	Green floral bud	18.289
	SRR3591713	Yellow flower	6.032
SRP173429	SRR8316895	Juvenile bud stage	29.378
	SRR8316896	Juvenile bud stage	47.998
	SRR8316897	Juvenile bud stage	13.624
	SRR8316894	Third green stage	18.688
	SRR8316900	Third green stage	28.100
	SRR8316901	Third green stage	26.607
	SRR8316898	Complete white stage	5.506
	SRR8316899	Complete white stage	31.634
	SRR8316903	Complete white stage	6.172
	SRR8316902	Silver flowering stage	6.705
	SRR8316904	Silver flowering stage	9.912
	SRR8316905	Silver flowering stage	4.950
	SRR8316906	Gold flowering stage	10.905
	SRR8316907	Gold flowering stage	9.577
	SRR8316908	Gold flowering stage	14.844
SRP132670	SRR6706286	Control	31.058
	SRR6706287	Light intensity 50%	33.518
	SRR6706288	Light intensity 20%	37.616
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.522
	CNS0095593	Slightly white alabastrum(diploid) 2	11.254
	CNS0095594	Slightly white alabastrum(diploid) 3	20.311
	CNS0095595	Whole white alabastrum(diploid) 2	14.460
	CNS0095596	Whole white alabastrum(diploid) 3	14.506
	CNS0095597	Whole white alabastrum(diploid) 4	17.481
	CNS0095598	Silvery flower (diploied) 1	24.303
	CNS0095599	Silvery flower (diploied) 2	13.253
	CNS0095600	Silvery flower (diploied) 3	15.497
	CNS0095601	Golden flower (diploid) 1	6.681
	CNS0095602	Golden flower (diploid) 2	11.241
	CNS0095603	Golden flower (diploid) 3	10.792
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.739
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.812
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.435
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.697
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.902
	CNS0095610	Silvery flower (tetraploid) 1	10.566
	CNS0095611	Silvery flower (tetraploid) 2	9.936
	CNS0095612	Silvery flower (tetraploid) 3	36.756
	CNS0095613	Golden flower (tetraploid) 1	2.566
	CNS0095614	Golden flower (tetraploid) 2	9.167
	CNS0095615	Golden flower (tetraploid) 3	2.707
CRA001975	CRR073297	Stem 1	30.033
	CRR073298	Stem 2	25.413
	CRR073299	Stem 3	56.422
	CRR073300	Leaf 1	17.444
	CRR073301	Leaf 2	22.416
	CRR073302	Leaf 3	15.485
	CRR073303	Juvenile bud 1	14.527
	CRR073304	Juvenile bud 2	26.978
	CRR073305	Juvenile bud 3	15.734
	CRR073306	Third green 1	34.921
	CRR073307	Third green 2	27.399
	CRR073308	Third green 3	26.137
	CRR073309	Second white 1	25.485
	CRR073310	Second white 2	18.208
	CRR073311	Second white 3	27.456
	CRR073312	Silver flowering 1	30.285
	CRR073313	Silver flowering 2	29.318
	CRR073314	Silver flowering 3	14.148
	CRR073315	Gold flowering 1	102.152
	CRR073316	Gold flowering 2	93.240
	CRR073317	Gold flowering 3	102.031
	CRR073318	Tawny withering 1	50.194
	CRR073319	Tawny withering 2	14.063
	CRR073320	Tawny withering 3	74.336