Gene detail

Detail information of GWHGAAZE021979

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279975.1	0	PREDICTED: pyruvate kinase isozyme A, chloroplastic [Vitis vinifera]
COG	YP_003690565.1	6E-123	pyruvate kinase
Swissprot	tr\|Q40545\|KPYA_TOBAC	0	Pyruvate kinase isozyme A, chloroplastic (Precursor)
trEMBL	tr\|F6HDW1\|F6HDW1_VITVI	0	Pyruvate kinase {ECO:0000256\|RuleBase:RU000504}
TAIR10	AT3G22960.1	0	Pyruvate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	65087475	65099675	+
GWHAAZE00000006	mRNA	65087475	65099675	+
GWHAAZE00000006	exon	65087475	65088053	+
GWHAAZE00000006	exon	65091004	65091094	+
GWHAAZE00000006	exon	65091228	65091421	+
GWHAAZE00000006	exon	65095842	65095963	+
GWHAAZE00000006	exon	65097639	65098164	+
GWHAAZE00000006	exon	65098395	65098452	+
GWHAAZE00000006	exon	65099374	65099675	+
GWHAAZE00000006	CDS	65087475	65088053	+
GWHAAZE00000006	CDS	65091004	65091094	+
GWHAAZE00000006	CDS	65091228	65091421	+
GWHAAZE00000006	CDS	65095842	65095963	+
GWHAAZE00000006	CDS	65097639	65098164	+
GWHAAZE00000006	CDS	65098395	65098452	+
GWHAAZE00000006	CDS	65099374	65099675	+

Transcript Sequence
>GWHTAAZE022005 ATGGCGCAGTCTCTCAATTTCTTCGTCTCCTCGTCCCGCTCACTTGGATTCACCGTTTCAAAGCACGCCTACTCCAAACCCTCACTCACCACCCCCAACACCACCAAATTACTCTCAACTACCTCCCTCCGTCGACCGATATCCGCGCTTTCATCTTCAGATCTCGATTCGTCTAATTCGCCTTCTCCGGTGCTGGTGTCCGACAACGGCCAGGGCGTATTATCCGCTCTATCGGCGGAGCAGGGTACGAGTTCTGCGGATTCCAGCTCGTTCGAGGTGGATGCGGTGACGGAGGCGGAGCTGAAGGAGAACGGATTCCGCAGCACGAGGAGGACGAAGCTGGTGTGTACGATTGGACCGGCTACTTGTGGATTTGATCAGCTCGAGGCGTTGGCGGTGGGAGGGATGAATGTGGCCAGGATTAATATGTGTCATGGGACAAGGGAGTGGCATAAGATGGTGATAGAGAGGGTGAGGAGATTGAATGAAGAGAAGGGGTATGCTGTTGCTATTATGATGGATACTGAAGGCAGTGAAATTCATATGGGGGACCTCGGTGGCCCTTCCGAAAAAACAGAGGATGGTGAGATATGGACTTTTAGCGTCCGAGCTTTTGATTCACATCGCCCAGAACGCACAATCACCGTGAACTATGATGGGTTTGCAGAAGATGTAAAAATTGGCGATGAACTCTTGGTGGATGGAGGAATGGTGAGGTTTGAGGTGATTGAAAAGCTTGGTCCAGATGTCAAGTGCCGATGCACTGATCCTGGGCTATTGTTACCTCGGGCTAATCTGACTTTTTGGCGAGATGGAAGCTTAGTACGAGAACGTAATGCAATGCTCCCTACTGTTTCTTCAAAGGATTGGTTGGACATTGATTTTGGAATCGCAGAGGGTGTTGATTTCATCGCCATATCTTTTGTCAAGTCTGCTGAAGTGATTAATCACCTCAAGAGCTATATAAAAGCAAGGGCACGTGATAGTGATATATCTGTGATTGCAAAGATAGAGAGCATCGACTCACTGAAGAACTTGGATGAGATCATTCAAGCATCAGATGGAGCAATGGTGGCTAGAGGAGATTTGGGTGCTCAGATCCCTCTGGAACAAGTCCCATCAGCCCAACAAAAGATTGTCCAACTTTGCCGACAGTTAAATAAGCCCGTCATTGTTGCCTCTCAGCTGCTTGAATCTATGATTGAATACCCTACGCCCACCAGAGCTGAGGTGGCCGATGTTTCCGAAGCAGTTAGACAAAGAGCAGACGCTTTAATGCTCTCTGGCGAGTCAGCTATGGGCCAGTTCCCTGATAAGGCATTGACGGTTTTGAGAAGTGTTAGTTTGAGAATCGAGAGGTGGTGGAGGGAAGAGAAACAACATGAGGCTATGGAACTCCCGGATATAGCTTCTTCGTTTTCGGACAGTATTTCGGAAGAGATTTGCAACTCTGCTGCCAAGATGGGTAAGATTTCTGCTGTTTTTTCCCTTGTACCCAAAGTAAATCATAGGGGTGTTCTTGCAGCAGTTGCAAAGTTAAGTAGAGATATGTTTTGTGGTGTGGATGTGGCAAACAATTTAGAGGTGGACGCACTCTTTGTGTACACAAAAAATGGGCACATGGCATCTCTCCTATCCCGTTGCCGCCCCGACTGCCCTATTTTTGCTTTTACAACCGCCACCTCCGTACGAAGACGCCTCAACCTTCAGTGGGGCCTAATACCATTCCGCCTCAGCTTTTCCGATGACATGGAAAGCAACCTCAACAAAACTTTCGCCTTGCTGAAGGCCCGAGGAATGATAAAATCCGGCGACCTCGTCATTGCCGTCTCTGACATGTTGCAGTCCATTCAAGTCATGAATGTCCCATAA

Network for GWHGAAZE021979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00224.22	PK	110	454	6.30E-93
PF02887.17	PK_C	521	613	1.50E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00873	PK, pyk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Purine metabolism	map00230
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004743	molecular_function	pyruvate kinase activity
GO:0000287	molecular_function	magnesium ion binding
GO:0030955	molecular_function	potassium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.915
	SRR3591706	second leaf	65.306
	SRR3591707	mature leaf	37.492
	SRR3591708	Shoot apex	66.185
	SRR3591709	Stem	40.212
	SRR3591710	White floral bud	51.007
	SRR3591711	White flower	52.856
	SRR3591712	Green floral bud	62.218
	SRR3591713	Yellow flower	42.285
SRP173429	SRR8316895	Juvenile bud stage	39.614
	SRR8316896	Juvenile bud stage	52.994
	SRR8316897	Juvenile bud stage	22.034
	SRR8316894	Third green stage	19.837
	SRR8316900	Third green stage	58.864
	SRR8316901	Third green stage	59.959
	SRR8316898	Complete white stage	22.364
	SRR8316899	Complete white stage	63.849
	SRR8316903	Complete white stage	37.912
	SRR8316902	Silver flowering stage	25.484
	SRR8316904	Silver flowering stage	27.960
	SRR8316905	Silver flowering stage	13.262
	SRR8316906	Gold flowering stage	42.824
	SRR8316907	Gold flowering stage	45.498
	SRR8316908	Gold flowering stage	51.094
SRP132670	SRR6706286	Control	65.870
	SRR6706287	Light intensity 50%	68.093
	SRR6706288	Light intensity 20%	70.469
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.365
	CNS0095593	Slightly white alabastrum(diploid) 2	40.180
	CNS0095594	Slightly white alabastrum(diploid) 3	37.614
	CNS0095595	Whole white alabastrum(diploid) 2	39.617
	CNS0095596	Whole white alabastrum(diploid) 3	33.949
	CNS0095597	Whole white alabastrum(diploid) 4	40.905
	CNS0095598	Silvery flower (diploied) 1	25.663
	CNS0095599	Silvery flower (diploied) 2	27.635
	CNS0095600	Silvery flower (diploied) 3	43.128
	CNS0095601	Golden flower (diploid) 1	22.526
	CNS0095602	Golden flower (diploid) 2	42.891
	CNS0095603	Golden flower (diploid) 3	38.167
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.210
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.698
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.320
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.162
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.217
	CNS0095609	Whole white alabastrum(tetraploid) 3	60.123
	CNS0095610	Silvery flower (tetraploid) 1	42.460
	CNS0095611	Silvery flower (tetraploid) 2	41.356
	CNS0095612	Silvery flower (tetraploid) 3	32.379
	CNS0095613	Golden flower (tetraploid) 1	18.667
	CNS0095614	Golden flower (tetraploid) 2	38.443
	CNS0095615	Golden flower (tetraploid) 3	15.438
CRA001975	CRR073297	Stem 1	70.167
	CRR073298	Stem 2	66.316
	CRR073299	Stem 3	67.314
	CRR073300	Leaf 1	73.155
	CRR073301	Leaf 2	67.077
	CRR073302	Leaf 3	64.000
	CRR073303	Juvenile bud 1	69.551
	CRR073304	Juvenile bud 2	59.308
	CRR073305	Juvenile bud 3	76.329
	CRR073306	Third green 1	48.635
	CRR073307	Third green 2	37.473
	CRR073308	Third green 3	44.922
	CRR073309	Second white 1	29.850
	CRR073310	Second white 2	24.865
	CRR073311	Second white 3	23.760
	CRR073312	Silver flowering 1	16.435
	CRR073313	Silver flowering 2	13.764
	CRR073314	Silver flowering 3	15.189
	CRR073315	Gold flowering 1	35.181
	CRR073316	Gold flowering 2	51.989
	CRR073317	Gold flowering 3	46.674
	CRR073318	Tawny withering 1	60.029
	CRR073319	Tawny withering 2	37.473
	CRR073320	Tawny withering 3	71.795