Gene detail

Detail information of GWHGAAZE021924

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009624017.1	0	PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA3 [Nicotiana tomentosiformis]
COG	NP_108142.1	1E-73	dimethylaniline monooxygenase
Swissprot	tr\|O23024\|YUC3_ARATH	0	Probable indole-3-pyruvate monooxygenase YUCCA3
trEMBL	tr\|M1ATX8\|M1ATX8_SOLTU	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}
TAIR10	AT1G04610.1	6E-179	YUCCA 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	64108068	64110432	+
GWHAAZE00000006	mRNA	64108068	64110432	+
GWHAAZE00000006	exon	64108068	64108727	+
GWHAAZE00000006	exon	64109157	64109528	+
GWHAAZE00000006	exon	64110202	64110432	+
GWHAAZE00000006	CDS	64108068	64108727	+
GWHAAZE00000006	CDS	64109157	64109528	+
GWHAAZE00000006	CDS	64110202	64110432	+

Transcript Sequence
>GWHTAAZE021950 ATGTGTCACCCTGTTGAGCATGAAGACCACTTCTTTGCTCGCAGATGCATACTAGTTAACGGGCCCGTCATCGTAGGGGCGGGCCCGTCAGGCCTAGCAGTAGCTGCAGGCTTGAAAAAACAAGGAGTACCTTTCATAGTACTCGAACGTGCCAATTGCATTGCCTCTCTATGGCAAAACAGAACGTATGACCGCCTAAAGCTCCACCTCCCAAAACAATTCTGCCAATTACCCTATTTCCCATTCCCTAGAAAATTCCCAGAATACCCATCTAAGTACCAGTTCATCAACTATCTCCAATCCTATGCTGACCACTTTGACATTAGCCCCCGGTTCAACGAGTCGGTCCAATGTGCCACGTACGATGACGCATGTGGGCTTTGGCGGGTGAGGACCAGCTCGGTGAGGGGTGGTGAGGTTGAGTATATTTGTAGGTGGTTAGTGGTGGCTACAGGAGAAAATGCCGATAAGGTGGTGCCTGAGTTTGAAGGGTTGAAGGATGAGTTTGGTGGGAATGTGATCCATGCTTGTGATTATAAGTCCGGTGAGGACTTTAGGGGAAAGCGTGTGTTGGTTGTTGGTTGTGGGAATTCTGGCATGGAGGTTTCTCTTGATCTTTGTCATCATAATGCGGCTCCATCGATGGTGGTCCGAAGCTCGGTTCATGTTCTGCCAAGGGAGATTCTTGGGAAATCAACATTTGAATTAGCTGTGTCAATGATGAAATGGTTGCCCATAGGCCTAGTTGATAAAATAATGCTGGTGACTGCAAAGATGGTGCTTGGCAACATAGAAAAGTATGGCTTAAAAAGGCCACAAATGGGTCCTTTACAGCTCAAGAACATTGAGGGAAAAACCCCTGTTTTGGATATTGGTGCTTTGAAAAAAATTAGAGCTGGAAAAATCAAAATAGTCCCTGGAATCAAGAGGTTTACGCGCGGTCGAGTCGAGCTTGTTAATGGTGAAAATCTTGAGATTCATTCAGTCATTTTAGCTACTGGGTATTGCAGCAATGTTCCTTCATGGTTAAAGGAAAATGATTTCTTTTCCAAAGAAGGCTTTCCTAGAGCTCCATTCCCAAATGGGTGGAAAGGAAAAGCTGGGATTTATGCAGTTGGTTTCACAAGGAAAGGTCTCTCTGGTGCATCGTTAGATGCCACTAGAGTAGCACAAGACATTGGCAAGATTTGGAAAGAAGAAACAAGCCACAAAAAGCACTCGGTGGCCGTTGCCTGCCCTCGCAAATGCAAATCTCATTTCTAA

Network for GWHGAAZE021924

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00743.20	FMO-like	24	340	6.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11816	YUCCA	Metabolic pathways	map01100
K11816	YUCCA	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004499	molecular_function	N,N-dimethylaniline monooxygenase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.430
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.183
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.120
	SRR3591711	White flower	2.584
	SRR3591712	Green floral bud	1.467
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.185
	SRR8316896	Juvenile bud stage	0.089
	SRR8316897	Juvenile bud stage	0.050
	SRR8316894	Third green stage	0.115
	SRR8316900	Third green stage	0.063
	SRR8316901	Third green stage	0.056
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.023
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.010
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.190
	CNS0095593	Slightly white alabastrum(diploid) 2	0.207
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.112
	CNS0095596	Whole white alabastrum(diploid) 3	0.107
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.002
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.177
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.082
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.157
	CRR073298	Stem 2	0.158
	CRR073299	Stem 3	0.590
	CRR073300	Leaf 1	0.205
	CRR073301	Leaf 2	0.139
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.056
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	2.354
	CRR073307	Third green 2	0.912
	CRR073308	Third green 3	1.447
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.128
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.128