Gene detail

Detail information of GWHGAAZE021907

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009797624.1	0	PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Nicotiana sylvestris]
COG	NP_295256.1	3E-25	hypothetical protein DR_1533
Swissprot	tr\|O22781\|SUVH2_ARATH	0	Histone-lysine N-methyltransferase family member SUVH2
trEMBL	tr\|A0A061EVF5\|A0A061EVF5_THECC	0	SU(VAR)3-9, putative isoform 1 {ECO:0000313\|EMBL:EOY06234.1}
TAIR10	AT2G33290.1	0	SU(VAR)3-9 homolog 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	63752151	63753437	-
GWHAAZE00000006	mRNA	63752151	63753437	-
GWHAAZE00000006	exon	63752151	63753437	-
GWHAAZE00000006	CDS	63752151	63753437	-

Transcript Sequence
>GWHTAAZE021933 ATGGAATTGTGTGTGCTTGGAATGCACGGACAAGCACAGGCTGGAATTGATTACTTGACTGCGAGCCAGAGCGAGAGTGGGGAGCCAATTGCTACGAGTGTGATCGTTTCTGGCGGTTACGAGGATGATGAGGATGCAGGGGATGTTATACTTTATACTGGTCATGGTGGGCAGGACAAGAATTCTTCGAGGCAATGTGTTCATCAGAAGTTGGAAGGGGGGAATCTTGGACTGGAAAGGAGTATGAACTATGGAATTGAGGTGAGGGTGATTCGAGGGTTTAAGTATGAAGGCAGTGCTAGTGGTAAGGTTTATGTTTATGATGGTTTATATAATGTTGTTGATACTTGGTTTGATGTGGGTAAGTCTGGTTTTGGGGTGTATAAATTTAAGCTAATTAGGTTAGGGAATCAACCCGAAATGGGAACTGCAATTCTTAGGTTTGCTCAGAATCTTAGGACTCTGCCATTGGCTGTTAGGCCGACAGGTTATGTTTCTCTTGATATATCAATGAACAAAGAAAATATCCCTGTATTTTTGTTTAATGACATTGATGATGATCAAGAACCTATGTACTACGATTATCTAGCGACGACTGTATTTCCTCCTTATGCATATCAAATTGGGGGAAAAGGGTGTGATTGTGTTTCGGGGTGTTTTGATGATTGCCTTTGCGCATTGAAAAATGGGGGTGAATTTGCTTACGACCGTAATGGCCTTCTTGTCAGAGGGAAACCTTTGATATTCGAGTGCGGTCCCCATTGTCATTGTCCTCCGAGTTGTCGAAATCGAGTTAGCCAAAAGGGTGTGAGGAATAGATTTGAAGTGTTTAGATCGAGGGAAACCGGTTGGGGAGTTAGGTCGTTGGACTTGATACAAGCTGGCTCTTTTATTTGTGAATATACAGGGGTTGTTCTCACAAGGGAACAAGCACAAATTATTAGTATGAATGGCGACAGTTTAGTTTACCCAAATCGGTTTGCAGAGAGGTGGGTAGAATGGGGGGATTTATCACAAGTGTTCTCTGATTACGTGCGCCCCTCGTACCCCTCAATCCCACCGTTGGATTTTGCGATGGATGTATCCAGAATGAGGAATGTTGCTTGTTATATGAGCCACAGTTCATGTCCTAATGTTCTGGTGCAGTTGGTTCTTTATGATCATTATAGTGTATCGTTCCCTCATCTTATGCTTTTTGCCATGGAGAATATCCCGCCCTTGAGGGAGCTTAGTCTTGATTATGGGATGGCTGATGAATGGGAAGAGAAGCTTCCCATATGCAACTAA

Network for GWHGAAZE021907

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.18	SAD_SRA	1	138	2.30E-39
PF05033.17	Pre-SET	170	264	3.20E-17
PF00856.29	SET	283	415	2.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0016571	biological_process	histone methylation
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.755
	SRR3591706	second leaf	6.539
	SRR3591707	mature leaf	9.016
	SRR3591708	Shoot apex	5.164
	SRR3591709	Stem	6.894
	SRR3591710	White floral bud	7.764
	SRR3591711	White flower	7.654
	SRR3591712	Green floral bud	11.251
	SRR3591713	Yellow flower	4.540
SRP173429	SRR8316895	Juvenile bud stage	5.602
	SRR8316896	Juvenile bud stage	9.108
	SRR8316897	Juvenile bud stage	2.158
	SRR8316894	Third green stage	2.470
	SRR8316900	Third green stage	8.892
	SRR8316901	Third green stage	10.518
	SRR8316898	Complete white stage	4.115
	SRR8316899	Complete white stage	14.046
	SRR8316903	Complete white stage	5.849
	SRR8316902	Silver flowering stage	2.581
	SRR8316904	Silver flowering stage	4.720
	SRR8316905	Silver flowering stage	2.075
	SRR8316906	Gold flowering stage	7.332
	SRR8316907	Gold flowering stage	6.474
	SRR8316908	Gold flowering stage	6.373
SRP132670	SRR6706286	Control	10.244
	SRR6706287	Light intensity 50%	10.000
	SRR6706288	Light intensity 20%	10.348
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.987
	CNS0095593	Slightly white alabastrum(diploid) 2	3.730
	CNS0095594	Slightly white alabastrum(diploid) 3	5.288
	CNS0095595	Whole white alabastrum(diploid) 2	7.374
	CNS0095596	Whole white alabastrum(diploid) 3	7.525
	CNS0095597	Whole white alabastrum(diploid) 4	6.871
	CNS0095598	Silvery flower (diploied) 1	6.629
	CNS0095599	Silvery flower (diploied) 2	4.164
	CNS0095600	Silvery flower (diploied) 3	9.033
	CNS0095601	Golden flower (diploid) 1	7.499
	CNS0095602	Golden flower (diploid) 2	8.227
	CNS0095603	Golden flower (diploid) 3	8.322
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.306
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.870
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.715
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.583
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.792
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.424
	CNS0095610	Silvery flower (tetraploid) 1	10.439
	CNS0095611	Silvery flower (tetraploid) 2	9.343
	CNS0095612	Silvery flower (tetraploid) 3	6.478
	CNS0095613	Golden flower (tetraploid) 1	3.492
	CNS0095614	Golden flower (tetraploid) 2	7.143
	CNS0095615	Golden flower (tetraploid) 3	2.663
CRA001975	CRR073297	Stem 1	9.380
	CRR073298	Stem 2	10.482
	CRR073299	Stem 3	8.451
	CRR073300	Leaf 1	9.313
	CRR073301	Leaf 2	7.213
	CRR073302	Leaf 3	6.133
	CRR073303	Juvenile bud 1	6.873
	CRR073304	Juvenile bud 2	6.377
	CRR073305	Juvenile bud 3	8.426
	CRR073306	Third green 1	1.835
	CRR073307	Third green 2	1.647
	CRR073308	Third green 3	0.763
	CRR073309	Second white 1	0.825
	CRR073310	Second white 2	0.990
	CRR073311	Second white 3	1.185
	CRR073312	Silver flowering 1	0.953
	CRR073313	Silver flowering 2	0.648
	CRR073314	Silver flowering 3	1.179
	CRR073315	Gold flowering 1	3.866
	CRR073316	Gold flowering 2	5.669
	CRR073317	Gold flowering 3	3.921
	CRR073318	Tawny withering 1	4.342
	CRR073319	Tawny withering 2	4.265
	CRR073320	Tawny withering 3	2.820