Gene detail

Detail information of GWHGAAZE021905

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003632010.1	2.4903E-104	PREDICTED: uncharacterized protein LOC100245990 [Vitis vinifera]
trEMBL	tr\|D7SZQ1\|D7SZQ1_VITVI	9E-105	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23730.3}
TAIR10	AT3G24315.1	3E-56	Sec20 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	63724295	63730873	+
GWHAAZE00000006	mRNA	63724295	63730873	+
GWHAAZE00000006	exon	63724295	63724587	+
GWHAAZE00000006	exon	63725244	63725313	+
GWHAAZE00000006	exon	63725537	63725592	+
GWHAAZE00000006	exon	63725769	63725844	+
GWHAAZE00000006	exon	63725957	63725993	+
GWHAAZE00000006	exon	63726340	63726427	+
GWHAAZE00000006	exon	63726508	63726589	+
GWHAAZE00000006	exon	63730410	63730543	+
GWHAAZE00000006	exon	63730633	63730873	+
GWHAAZE00000006	CDS	63724295	63724587	+
GWHAAZE00000006	CDS	63725244	63725313	+
GWHAAZE00000006	CDS	63725537	63725592	+
GWHAAZE00000006	CDS	63725769	63725844	+
GWHAAZE00000006	CDS	63725957	63725993	+
GWHAAZE00000006	CDS	63726340	63726427	+
GWHAAZE00000006	CDS	63726508	63726589	+
GWHAAZE00000006	CDS	63730410	63730543	+
GWHAAZE00000006	CDS	63730633	63730873	+

Transcript Sequence
>GWHTAAZE021931 ATGGACGAGGTAGTGGAGGCGGTTGAGACGGCAAAGAAAGATTGGGAGGAAGCATACAATCGAACTCAACAACACATACGATCAATCGAAGAGTATGGCAAATCTGTCAGATCTAATAATCCGGAGGAAAAGAAGAATTCGCTCCCTAGATTGAACGGTCTCGCTCAGGATGGATTGTCTATGCTCTCATCGTTGCAATTCAAGCTTGATCTTCTCGCTCCTCAGCTTCCTTCTGATGATGAAGTTCAGGTTGCCCTATCCTTGCTCCAATCCTGGAAAAATCAAATTCAAAGTTTGAGAGTGAGCTTAAGAAATGCTAACTTGCAAGCAAAGGCTAACATGAGGAAAGCAGCTCAAGAAGAGAGGGAGCTTCTCTTGGGAGCTGGAGAAGAGTCCACAGTTCGCAGACGCAATTTGCAGACAAAAGCCGGAATGACTTCTGCGGCAGAGAGCATTACAGAGAGCCTCAGACGTACTCGTCAGCTGATGGTTCAGGAGGTTGAAAGAAGTGGGAGTACGCTAATGACTTTTGACTCTATTAACTTCGGAAGTGGGAATGAGGAAAAATTTGGTAATCTTGTTAAATTAGTGGAGTTGTTGCTTCTTAGGTCTTTGTTCAGGTTCAATCTAGTTAGTAAGGTTGGTTATGAGGTGGTGGTATGGCCGGTGAGTTATCTTGACTTTCCTGTGGAAATGAAGTGGTGTGCATTGAATATCTCAGAGGAATCAACAGGAGTACTAAAGAAGGCTGAAAGCGAATACAAAGGCCACCGCTCGCTGCTGATGCGAACCCGCAACTTACTCTCAACAATGCAACGCCAAGACGTACTTGACAGGGTGATACTAGTCACTGGATTCCTATTATTCTCCTTGGCCGTTCTTTATGTTGTTTCGAAGCGCATTGGGATACTCAAGTTGCAGAGAACAGTTACTGCTGCCATAAAATCTGGCATGGCCGGACAAGCAGAGCTCGTACGCAGAGTTGGCGGAGATGGCATTAACGTTGCTCGAGTGCATGAGAATGCGGTTCCTAATATGGAGGTAGCCTTAGAACAACTCATGCATGACGAACTTTGA

Network for GWHGAAZE021905

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03908.14	Sec20	239	301	2.20E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08497	SEC20	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name
GO:0006890	biological_process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0005484	molecular_function	SNAP receptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.309
	SRR3591706	second leaf	13.788
	SRR3591707	mature leaf	16.177
	SRR3591708	Shoot apex	23.248
	SRR3591709	Stem	31.199
	SRR3591710	White floral bud	28.388
	SRR3591711	White flower	31.070
	SRR3591712	Green floral bud	28.424
	SRR3591713	Yellow flower	32.702
SRP173429	SRR8316895	Juvenile bud stage	14.822
	SRR8316896	Juvenile bud stage	23.415
	SRR8316897	Juvenile bud stage	8.637
	SRR8316894	Third green stage	8.747
	SRR8316900	Third green stage	24.503
	SRR8316901	Third green stage	28.656
	SRR8316898	Complete white stage	18.175
	SRR8316899	Complete white stage	37.587
	SRR8316903	Complete white stage	20.707
	SRR8316902	Silver flowering stage	14.943
	SRR8316904	Silver flowering stage	18.330
	SRR8316905	Silver flowering stage	9.609
	SRR8316906	Gold flowering stage	36.895
	SRR8316907	Gold flowering stage	32.720
	SRR8316908	Gold flowering stage	39.715
SRP132670	SRR6706286	Control	17.907
	SRR6706287	Light intensity 50%	19.804
	SRR6706288	Light intensity 20%	21.850
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.636
	CNS0095593	Slightly white alabastrum(diploid) 2	27.049
	CNS0095594	Slightly white alabastrum(diploid) 3	21.715
	CNS0095595	Whole white alabastrum(diploid) 2	21.667
	CNS0095596	Whole white alabastrum(diploid) 3	25.107
	CNS0095597	Whole white alabastrum(diploid) 4	21.038
	CNS0095598	Silvery flower (diploied) 1	25.936
	CNS0095599	Silvery flower (diploied) 2	25.751
	CNS0095600	Silvery flower (diploied) 3	29.491
	CNS0095601	Golden flower (diploid) 1	22.939
	CNS0095602	Golden flower (diploid) 2	28.070
	CNS0095603	Golden flower (diploid) 3	25.989
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.071
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.384
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.903
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.342
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.905
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.468
	CNS0095610	Silvery flower (tetraploid) 1	33.979
	CNS0095611	Silvery flower (tetraploid) 2	30.545
	CNS0095612	Silvery flower (tetraploid) 3	35.507
	CNS0095613	Golden flower (tetraploid) 1	27.628
	CNS0095614	Golden flower (tetraploid) 2	27.714
	CNS0095615	Golden flower (tetraploid) 3	27.984
CRA001975	CRR073297	Stem 1	31.457
	CRR073298	Stem 2	25.812
	CRR073299	Stem 3	34.353
	CRR073300	Leaf 1	28.171
	CRR073301	Leaf 2	25.955
	CRR073302	Leaf 3	28.148
	CRR073303	Juvenile bud 1	29.974
	CRR073304	Juvenile bud 2	30.232
	CRR073305	Juvenile bud 3	29.352
	CRR073306	Third green 1	19.591
	CRR073307	Third green 2	28.135
	CRR073308	Third green 3	22.818
	CRR073309	Second white 1	28.167
	CRR073310	Second white 2	27.728
	CRR073311	Second white 3	25.327
	CRR073312	Silver flowering 1	21.826
	CRR073313	Silver flowering 2	16.513
	CRR073314	Silver flowering 3	22.552
	CRR073315	Gold flowering 1	29.945
	CRR073316	Gold flowering 2	34.194
	CRR073317	Gold flowering 3	23.981
	CRR073318	Tawny withering 1	28.677
	CRR073319	Tawny withering 2	26.227
	CRR073320	Tawny withering 3	29.089