Gene detail

Detail information of GWHGAAZE021789

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010264056.1	0	PREDICTED: chalcone synthase 1 [Nelumbo nucifera]
COG	YP_004652342.1	2E-46	hypothetical protein PUV_15380
Swissprot	tr\|P48386\|CHS1_CAMSI	0	Chalcone synthase 1
trEMBL	tr\|D6C6K8\|D6C6K8_NELNU	0	Chalcone synthase {ECO:0000313\|EMBL:ADD74169.1}
TAIR10	AT5G13930.1	0	Chalcone and stilbene synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61494956	61497478	+
GWHAAZE00000006	mRNA	61494956	61497478	+
GWHAAZE00000006	exon	61494956	61495190	+
GWHAAZE00000006	exon	61496487	61497478	+
GWHAAZE00000006	CDS	61494956	61495190	+
GWHAAZE00000006	CDS	61496487	61497478	+

Transcript Sequence
>GWHTAAZE021813 CCACCTCTACAAGCATCTGATAAAACAATATTTATACAGATTTTCGCCCTAGAAAAAATGGTCACGGTCGAGGACGTTCGAAAGTCTCAACGGGCTGAGGGTCCCGCGGCAGTGCTAGCCATCGGAACCGCAACTCCAACTCATTGCGTGGATCAAAGCACGTATCCTGATTATTATTTTCGTATTACGAATAGCGAACACAAGACTGAACTTAAGGAAAAATTTAAGCGCATGTGCGAAAAATCCATGATCAAAAAGCGTTACATGCACTTAACAGAGGAAATCCTGAAGGAAAATCCCAGCATCTGCGAGTACATGGCACCATCACTTGACGCTAGGCAAGACATGGTGGTGGTAGAAGTACCAAAACTCGGCAAAGAAGCAGCCACAAAGGCAATTAAAGAGTGGGGACAACCCAAATCCAAGATCACCCACCTCGTCTTTTGCACCACTAGCGGTGTTGACATGCCGGGTGCCGATTTCCAGCTCACAAAGCTCCTTGGCCTCCGCCCTTCAGTCAAGCGCCTCATGATGTACCAACAAGGCTGCTTCGCTGGTGGCACTGTCCTCCGCCTGGCAAAAGACCTGGCGGAGAACAACACAGGGGCCCGCGTGCTAGTGGTCTGCTCTGAGATAACTGCAGTCACATTTAGGGGACCTAGTGACACGCATCTTGACAGCCTAGTTGGCCAGGCTCTTTTTGGTGACGGCGCAGCCGCCATCATAATCGGGTCAGACCCGGTATTAGGGATCGAAAGGCCATTGTTTGAGCTTGTTTCGGCCTCTCAAACTATTTTACCGGATAGCGATGGGGCTATTGACGGGCATCTTCGCGAAGTTGGGCTTACGTTTCACTTACTGAAAGACGTGCCAGTGCTAATTTCGAAGAACATCGAGAAGAGTTTGGTAGAGGCATTTAAACCACTAGGTATCTCGGACTGGAACTCGCTTTTCTGGATTGCCCATCCGGGTGGGCCTGCGATTTTGGACCAAGTGGAGGAAAAATTGGCACTTAAGCCAGAGAAATTGGGGGCGACAAGGCATGTGCTTAGTGAGTATGGGAATATGTCTAGTGCTTGTGTGTTGTTTATTATGGATGAAATGAGGAAGAAATCAGTCAAGGAGGGTCTTGAAACCACTGGTGAAGGGCTCGAGTGGGGTGTGCTTTTTGGGTTCGGGCCAGGGCTCACTGTTGAGACTGTGGTTCTTCACGGTTTGGCCACTTGA

Network for GWHGAAZE021789

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00195.20	Chal_sti_synt_N	24	247	1.70E-124
PF02797.16	Chal_sti_synt_C	257	406	8.30E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00660	CHS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Flavonoid biosynthesis	map00941
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016746	molecular_function	transferase activity, transferring acyl groups
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.327
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.044
	SRR3591708	Shoot apex	1.149
	SRR3591709	Stem	33.760
	SRR3591710	White floral bud	7.697
	SRR3591711	White flower	4.852
	SRR3591712	Green floral bud	5.427
	SRR3591713	Yellow flower	0.130
SRP173429	SRR8316895	Juvenile bud stage	3.868
	SRR8316896	Juvenile bud stage	1.415
	SRR8316897	Juvenile bud stage	0.042
	SRR8316894	Third green stage	1.095
	SRR8316900	Third green stage	1.145
	SRR8316901	Third green stage	1.575
	SRR8316898	Complete white stage	0.521
	SRR8316899	Complete white stage	10.276
	SRR8316903	Complete white stage	2.637
	SRR8316902	Silver flowering stage	0.131
	SRR8316904	Silver flowering stage	0.171
	SRR8316905	Silver flowering stage	0.071
	SRR8316906	Gold flowering stage	0.652
	SRR8316907	Gold flowering stage	0.102
	SRR8316908	Gold flowering stage	0.067
SRP132670	SRR6706286	Control	2.554
	SRR6706287	Light intensity 50%	1.682
	SRR6706288	Light intensity 20%	1.864
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.991
	CNS0095593	Slightly white alabastrum(diploid) 2	4.266
	CNS0095594	Slightly white alabastrum(diploid) 3	7.091
	CNS0095595	Whole white alabastrum(diploid) 2	9.569
	CNS0095596	Whole white alabastrum(diploid) 3	0.985
	CNS0095597	Whole white alabastrum(diploid) 4	3.793
	CNS0095598	Silvery flower (diploied) 1	13.862
	CNS0095599	Silvery flower (diploied) 2	10.013
	CNS0095600	Silvery flower (diploied) 3	5.333
	CNS0095601	Golden flower (diploid) 1	5.979
	CNS0095602	Golden flower (diploid) 2	2.975
	CNS0095603	Golden flower (diploid) 3	2.752
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.438
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.888
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.615
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.016
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.193
	CNS0095610	Silvery flower (tetraploid) 1	0.347
	CNS0095611	Silvery flower (tetraploid) 2	0.245
	CNS0095612	Silvery flower (tetraploid) 3	0.315
	CNS0095613	Golden flower (tetraploid) 1	0.248
	CNS0095614	Golden flower (tetraploid) 2	0.258
	CNS0095615	Golden flower (tetraploid) 3	0.259
CRA001975	CRR073297	Stem 1	3.421
	CRR073298	Stem 2	2.047
	CRR073299	Stem 3	2.341
	CRR073300	Leaf 1	3.008
	CRR073301	Leaf 2	2.595
	CRR073302	Leaf 3	2.778
	CRR073303	Juvenile bud 1	2.678
	CRR073304	Juvenile bud 2	1.425
	CRR073305	Juvenile bud 3	6.057
	CRR073306	Third green 1	0.590
	CRR073307	Third green 2	1.614
	CRR073308	Third green 3	1.150
	CRR073309	Second white 1	0.497
	CRR073310	Second white 2	0.290
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.929
	CRR073316	Gold flowering 2	0.982
	CRR073317	Gold flowering 3	0.717
	CRR073318	Tawny withering 1	26.348
	CRR073319	Tawny withering 2	21.890
	CRR073320	Tawny withering 3	21.105